SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene62533

Length: 600 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene62533

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Map3k delta-1 protein kinase, putative n=1 Tax=Ricinus communis RepID=B9RZR2_RICCO	-	-	4.00001e-40	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Blast2go	pas domain-containing tyrosine kinase-like protein	-	-	0.0	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein kinase activity	GO:0004672	Molecular Function	0.0	86%

Source	InterPros	Term	Type	Identity
Sma3	PAS	IPR000014	-	-
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3		IPR000173	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	ATPase, F0 complex, subunit A	IPR000568	-	-
Sma3	PAS-associated, C-terminal	IPR000700	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	BRCT domain	IPR001357	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	PAC motif	IPR001610	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Dilute	IPR002710	-	-
Sma3	Ubiquitin interacting motif	IPR003903	-	-
Sma3	Myosin, N-terminal, SH3-like	IPR004009	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	PAS fold	IPR013767	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Dil domain	IPR018444	-	-

Full-Lengther Next Prediction

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
300	88		11		0.923564
301	88			11	0.923564
303	88		11		0.991528
306	11			88	0.991528
309	88			11	0.923564
310	88			11	0.923564
313	88		11		0.923564
317	88		11		0.923564
319	88	11			0.923564
320	11		88		0.923564
321	88	11			0.923564
322	88			11	0.923564
324	11		88		0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain