SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene62510

Length: 571 nt

Origin of reads: Biogeco1 v2 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene62510

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Phosphoenolpyruvate carboxykinase [ATP], putative n=1 Tax=Ricinus communis RepID=B9R6Q4_RICCO	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	73%
Blast2go	phosphoenolpyruvate carboxykinase	-	-	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	84%

Source	InterPros	Term	Type	Identity
Sma3	Phosphoenolpyruvate carboxykinase, ATP-utilising	IPR001272	-	-
Sma3	Phosphoenolpyruvate carboxykinase, N-terminal	IPR008210	-	-
Sma3	Phosphoenolpyruvate carboxykinase, C-terminal	IPR013035	-	-
Sma3	Aldehyde dehydrogenase domain	IPR015590	-	-
Sma3	Phosphoenolpyruvate carboxykinase (ATP), conserved site	IPR015994	-	-

Full-Lengther Next Prediction

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
4		66	33		0.997471
6			33	66	0.997471
9		66	33		0.997467
12	33			66	0.997457
22			33	66	0.997467
119		25	75		0.996473
123	75		25		0.996473
126	75	25			0.996473
127		75		25	0.996473
131		25		75	0.996473
135		25	75		0.996473
136	25			75	0.996473
139		25	75		0.996473
140	25		75		0.996473
149	75		25		0.996473
317		75	25		0.996473
402			20	80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain