SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene62381

Length: 1405 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene62381 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative sinapyl alcohol dehydrogenase (Fragment) n=1 Tax=Pinus banksiana RepID=E5F5P1_PINBN	-	-	89%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	sinapyl alcohol dehydrogenase	-	-	90%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PS97

Fln msg:

Fln protein: MVKEGAIGQFEVEVEGWAARDDSGILSPINFTRRKTGSNDVTFKVEYCGICHSDLHQIRNEWKNSIYPMVPGHEIVGCVTEVGSEVKNFAVGDRVGVGCMVWSCHQCDSCSEGQEQYCEKMVLTYNAINVDGSPTYGGYSSLMVCDQSFVVKIPETLPFDAAAPLLCAGITVYSPMKYLQMSQPGKSLGVVGLGGLGHMAVKIGKALGLKVTVISTSARKEKEAREDLGADHFIISKDPKQMEDAAKSLDYIIDTVSADHPLQPLLNLLKVNGKLVLVGLPENPVSFHPAGVISGRRFVGGSAIGGIKETQEMLDFCAEHNISCMIENIPIDYVNTAMERLVKGDVKYRFVINVAESFSGAN*

Protein Length: 364

Fln nts: ATGGGAGTATTCCAAAGAGTAATTAGAGGATTCTAGATAATCGTGACGCCATTGCTGACTGCCTTCAAGGATTCCAATCGCTGGCGCAATTGCTGAGAACCTTTATTTTTTGAGGCGAGAAG_-_ATGGTGAAGGAAGGAGCTATTGGTCAGTTTGAGGTCGAGGTTGAGGGATGGGCGGCCAGGGATGACTCTGGCATTCTCTCGCCCATTAACTTTACTCGCAGGAAAACTGGATCCAATGACGTAACTTTCAAGGTCGAATACTGTGGAATTTGTCACTCTGATTTGCACCAAATTCGGAACGAATGGAAAAATTCGATATACCCAATGGTTCCAGGGCACGAAATTGTAGGGTGTGTAACTGAAGTGGGGTCAGAAGTGAAGAATTTCGCTGTTGGAGATCGCGTGGGGGTGGGCTGCATGGTTTGGAGCTGCCACCAATGTGATTCCTGTAGCGAAGGGCAAGAACAGTATTGTGAGAAGATGGTTTTGACATATAACGCCATTAATGTGGACGGGTCTCCCACTTATGGAGGTTATTCATCCTTGATGGTCTGTGACCAAAGTTTTGTAGTGAAGATTCCAGAGACTCTGCCGTTTGATGCAGCAGCCCCATTGCTCTGTGCGGGAATAACTGTATACAGCCCCATGAAATACCTCCAGATGTCTCAGCCTGGTAAAAGCCTTGGCGTTGTGGGGCTTGGCGGTTTGGGACACATGGCTGTGAAAATTGGAAAAGCTTTAGGACTGAAAGTAACGGTAATCAGTACATCGGCTAGGAAGGAAAAAGAAGCCAGAGAGGATTTGGGGGCAGACCACTTCATCATCAGCAAAGATCCGAAACAGATGGAGGATGCGGCCAAGTCCCTGGATTACATAATTGACACGGTCTCTGCAGACCATCCTTTGCAGCCTCTCCTCAATTTATTGAAAGTGAATGGGAAACTGGTTTTGGTTGGTCTGCCAGAAAATCCTGTTTCTTTTCATCCTGCAGGCGTCATATCTGGTCGGCGATTTGTAGGGGGCAGTGCGATTGGAGGAATAAAGGAAACGCAAGAGATGTTGGACTTCTGTGCAGAGCATAACATCTCGTGCATGATTGAAAACATTCCAATCGACTACGTGAATACAGCAATGGAACGATTAGTGAAGGGAGATGTGAAGTACCGTTTTGTAATCAACGTTGCTGAAAGCTTTTCTGGTGCAAACTGA___GTGAGATTGAAATGATGCTATTATTTCTGGTGATAGCCAAATATAATAGGTTGGGCGTGTTTAAAGAGTCGAGTTACAGTTGTCATTGTAACAGATAGTAGACTAGTTAAAAGAAAAATGAAACGAGGGAAAATATTGTGGAATCCAAGCTAATTTTTTCAGTCATGGTGAAGGCTTTTGTATTTACATTTCTC

Fln Alignment:

AllPineV4_rep_c74454___MVKEGAIGQFEVEVEGWAARDDSGILSPINFTRRKTGSNDVTFKVEYCGICHSDLHQIRNEWKNSIYPMVPGHEIVGCVTEVGSEVKNFAVGDRVGVGCMVWSCHQCDSCSEGQEQYCEKMVLTYNAINVDGSPTYGGYSSLMVCDQSFVVKIPETLPFDAAAPLLCAGITVYSPMKYLQMSQPGKSXXXXXXXXXGHMAVKIGKALGLKVTVISTSARKEKEAREDLGADHFIISKDPKQMEDAAKSLDYIIDTVSADHPLQPXXXXXXXXXXXXXXXLPENPVSFHPAGVISGRRFVGGSAIGGIKETQEMLDFCAEHNISCMIENIPIDYVNTAMERLVKGDVKYRFVINVAESFS
C0PS97_______________MVNEGELSRFEVEVEGWAARDDSGILSPINFTRRKTGSNDVTFKVAYCGICHSDLHQIRNEWKNSMYPMVPGHEIVGLVTEVGSEVKKFAVGDRVGVGCMVWSCQQCDSCSEGQEQYCDKTVLTYNAINADGSPTFGGYSSLMVCNQRFVVKIPETLPFDAAAPLLCAGITVYSPMKYLQMTEPGKSLGVVGLGGLGHMAVKLGKAFGLRVTVISTSPKKEKEAREVLGADHFIISKDQKQMQDAAKSLDYIIDTVSADHPIQPLISLLKVQGKLVLVGLPENPIYFHPAAVISGRRFVGGSSIGGVKETQEMLDFCAEHNISCMIENIPIDYVNTAMERLGKGDVKYRFVINVAESYS

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
900		25		75	0.996473
991	80		20		0.995493
1019	20		80		0.995493
1077	83		16		0.994512
1193			16	83	0.994512
1303	33		33		0.997752

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain