SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene62337

Length: 1071 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene62337

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	large subunit ribosomal protein L24e [Arabidopsis thaliana] ref\|NP_001078059.1\| large subunit ribosomal protein L24e [Arabidopsis thaliana] sp\|O22165.1\|RLP24_ARATH RecName: Full=Probable ribosome biogenesis protein RLP24 gb\|AAC31838.1\| 60S ribosomal prote	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	large subunit ribosomal protein l24e	-	-	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleolus	GO:0005730	Cellular Component	0.0	83%
Blast2go	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	0.0	83%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L24e-related	IPR000988	-	0.0	-
Sma3	TRASH	IPR011017	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
169	83	16			0.994512
185			14	85	0.993533
187			14	85	0.993533
190		33	16	50	1.0
203			88	11	0.991528
205	88			11	0.991528
206			88	11	0.991528
439	85			14	0.993533
440	85			14	0.993533
443		14		85	0.993533
540		16		83	0.994512
616	66			33	0.997452
617			75	25	0.996473
618	75	25			0.996473
619	75		25		0.996473
620		25		75	0.996473
997	33			66	0.997452
999	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain