SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene62319

Length: 1608 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene62319 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Late embryogenesis abundant-like protein (Fragment) n=19 Tax=Picea sitchensis RepID=E0ZAL6_PICSI	-	-	90%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	late embryogenesis abundant-like protein	-	-	92%

Source	InterPros	Term	Type	Identity
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Phospholipase A2, active site	IPR013090	-	-
Sma3	Root cap	IPR009646	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NSR1

Fln msg:

Fln protein: MAFKWALVAVTCCLVAGAVQVSAWKASCQDPYYGGCYGIAHACPPGCPRVCEVDCKLCKPICACDKPGAVCQDPRFIGGDGIMFYFHGKKDRDFCLVSETNLQINGHFIGKSKEGGLKRDFTWVQSIGVQFDSHKLYLGANKVAKWDDARDELSLFLDNEPIVLPPGRGAEWESTSARGLKISRLQDANSVTVHVTESVTITARVVPITAEESRIHKYEITEDDCFAHLELNFKFLALSPHVTGVLGQTYSAGFKSPVKVGVAMPIMGGEDKFAASGLFDADCKVTRFAGRAIESVAGHNFPEVACGSGSAAGRGIVCRK*

Protein Length: 322

Fln nts: AATGAGAGCGATGGGCATGTGAACACCGCAGCAGCACTGCCCAGTGCCAACCACCCGCCACCTCATCTCCCTTCTGCAGAAAGGACAGGATGCACGTGAAAGCCCTTTAGCCTCTGGCCAGATGCATGGACCTCCGTTCACCCTACAGATCTATATCGTCGTGACCTTGGCTGTCACTCAATACAGTGTAATAGTTCGCTGAGCAAAA_-_ATGGCTTTCAAGTGGGCTCTGGTTGCTGTTACCTGTTGCCTTGTTGCAGGAGCAGTCCAAGTTAGCGCATGGAAGGCTAGTTGCCAGGATCCTTACTATGGAGGTTGCTATGGGATTGCTCATGCCTGCCCTCCTGGTTGTCCCAGGGTCTGTGAAGTGGATTGCAAGCTCTGCAAACCAATTTGTGCCTGTGACAAGCCGGGCGCAGTGTGCCAGGACCCCAGATTCATAGGCGGGGATGGCATTATGTTCTACTTTCATGGCAAGAAGGACCGGGATTTCTGCCTTGTCTCCGAGACCAATCTACAGATCAATGGGCATTTCATTGGCAAGAGCAAAGAGGGGGGTTTAAAGCGCGATTTCACGTGGGTGCAGTCCATAGGTGTGCAGTTCGATTCCCACAAACTCTACTTGGGCGCTAACAAGGTTGCCAAGTGGGACGATGCCCGCGACGAGCTCTCTCTCTTCCTGGACAACGAGCCGATCGTCCTCCCGCCGGGCCGTGGCGCCGAGTGGGAGTCCACGTCGGCGCGCGGGCTCAAGATCAGCCGCCTCCAGGACGCAAACAGCGTCACCGTCCATGTGACCGAGAGCGTCACCATCACGGCCCGAGTGGTACCCATCACCGCAGAGGAGTCGAGAATCCACAAATATGAGATCACCGAAGACGACTGCTTCGCCCATCTGGAGCTCAACTTCAAGTTCTTGGCTCTCAGTCCCCATGTGACCGGGGTCCTGGGGCAGACCTATTCGGCCGGTTTCAAGAGCCCCGTGAAGGTCGGCGTGGCCATGCCCATCATGGGAGGAGAAGATAAGTTTGCGGCCTCGGGTCTCTTTGATGCTGACTGCAAGGTCACAAGGTTTGCAGGTCGCGCGATCGAGTCTGTGGCCGGACACAACTTCCCTGAAGTTGCCTGCGGTAGTGGCAGCGCAGCTGGACGTGGTATTGTGTGCCGGAAGTAG___CACAGTTTTCTGTACCAATATCCAGCAGTATCTAACAATAAATTCTGCTTTCCTGTACTAGTATTATAGCTTTTACTTTATAATAATAATATGTAGTGGATACTGTACTCTAAGGCCATTTCTAATGATCTGTGCTTAACAATAGGGGTGGAATATGATCTGTCTAGGTGGTTAGCTACGAGGTTCAGCAAAGGCTGCTTTGTAAGTTTGTATAATGTATCTGAGAACACTCCTGGTGTTCTGTGTTTCATAGTCTGCATAGGGTATGCTCAGCCTTGGTGGTCAGCTATGAGGTTTGTTCAGCAAAGGCTGAAAGGTAGGAGTTACTTTGAATAAGGTTGGATGCTTTTAATTGTATAAGTACAGTTGAAATCTTAATAATGCATCATTATCCAGTTTGTATTCCTCTTATAATTATAAGAAGATTCTAACAGCTT

Fln Alignment:

AllPineV4_rep_c73904___MAFKWALVAVTCCLVAGAVQVSAWKASCQDPYYGGCYGIAHACPPGCPRVCEVDCKLCKPICACDKPGAVCQDPRFIGGDGIMFYFHGKKDRDFCLVSETNLQINGHFIGKSKEGGLKRDFTWVQSIGVQFDSHKLYLGANKVAKWDDARDELSLFLDNEPIVLPPGRGAEWESTSARGLKISRLQDANSVTVHVTESVTITARVVPITAEESRIHKYEITEDDCFAHLELNFKFLALSPHVTGVLGQTYSAGFKSPVKVGVAMPIMGGEDKFAASGLFDADCKVTRFAGRAIESVAGHNFPEVACGSGSAAGRGIVCRK
A9NSR1_______________MACKWVLFAVACCLVAAA-QVRAWKASCQDPYYGSCYGIAHVCPPGCPRVCEVDCKLCKPICACDKPGAVCQDPRFIGGDGIMFYFHGKKDRDFCLVSETNLHINGHFIGKSKKQGLKRDFTWVQSIGVQFDSHKLYLGANKVAKWDDARDELSLLLDDQPIVLPPGRGADWESASAPGLKISRLQDANSVTVEVAESFVITARVVPITAEESRIHKYEITEDDCFAHLELNFKFFALSPQVTGVLGQTYSAGFKSPVKVGVAMPIMGGEDKFAASDLFAADCKVARFAGRAIESVAGHNFPEVACGSGSAAGRGIVCRK

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
442	14			85	1.0
444		85		14	1.0
445			14	85	1.0
448	14			85	1.0
449			14	85	1.0
461	85		14		1.0
730	93		6		0.999153
737		6	93		0.999264
1271			90	9	1.0
1419	5	94			0.998397
1423			2	91	0.995912
1446	93	6			0.999264
1448		6		90	0.997544
1451	6	6	83		0.986027
1452		6		93	0.999264
1453	82	13			1.0
1454		17		79	1.0
1455	3	44		48	1.0
1457		44	51	3	1.0
1458	81	18			1.0
1459	18		55		1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
347	358	TAT TAT TAT TAT	12

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain