SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene62315

Length: 1209 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene62315 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative histone H1 n=2 Tax=Pinaceae RepID=Q84L42_PINPS	-	-	1.0e-26	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	histone-like protein	-	-	0.0	77%

Source	InterPros	Term	Type	Identity
Sma3	Histone H1/H5	IPR005818	-	-
Sma3	Histone H5	IPR005819	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: C0PTL2

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 23 aas, your sequence is shorter than subject: 201 - 224

Fln protein: MASAETTAEPVANNVVKEKKPRASKGSKPPPSHPTYLQMITEAITSLKERTGSSQYAIAGYIGKKYQSQLPANFKKVLAVQLRNLAKSGKLTKVKNSFKLSEELKKPAKPKAAKPVKPKAPAKKPAAKPKVAAKKAPKSAKPAAKIAKAPKVAKPKPAAAPKKVEKAAAPAKKPAPAKKAAPPAKKPAPAKKPAPAAKTS*

Protein Length: 202

Fln nts: ATGGGATCCGAACGGTTATTTTCTCGATATTTGTCTTCCCGCTTTTGATTTTGTCTGCCAAGATCTCGATTTTGCTTTTGTTACCGTCTCTTTTTTTTACAGGTCTCGAACAATTCGGTGCTATCAACA_-_ATGGCTTCAGCTGAGACAACTGCCGAGCCTGTAGCCAACAATGTTGTAAAGGAAAAGAAGCCGAGGGCTTCCAAGGGATCGAAACCGCCACCTTCTCATCCTACATATCTCCAGATGATCACGGAAGCGATCACTTCTTTGAAGGAGAGGACCGGGTCAAGCCAGTATGCCATCGCAGGTTATATCGGGAAGAAATACCAGTCTCAACTGCCTGCGAATTTCAAGAAGGTGCTAGCAGTTCAGCTGAGAAATCTTGCCAAATCTGGCAAGCTCACAAAGGTCAAGAATTCCTTCAAGCTTTCTGAGGAGCTGAAGAAGCCTGCGAAGCCGAAGGCCGCCAAGCCTGTGAAGCCTAAAGCCCCGGCCAAGAAGCCCGCAGCGAAGCCCAAGGTAGCGGCTAAGAAGGCTCCCAAGTCCGCTAAACCTGCCGCCAAAATAGCCAAGGCTCCAAAGGTCGCTAAGCCGAAGCCTGCAGCGGCTCCCAAGAAGGTGGAGAAGGCGGCAGCACCGGCTAAGAAGCCAGCGCCTGCTAAAAAGGCTGCCCCGCCTGCGAAGAAGCCAGCCCCTGCGAAGAAGCCTGCTCCTGCTGCAAAGACGTCGTGA___CCTTGGCTGTCACTCAGTTATTTTTCTAACTGTAAACTAGTCTGACACTTTGACATTTTGCATGGCCTGTTGTGGCCATAGGTGTCTATACTCGTTATTATTATGATTATTGTTATTGTTACAGGGTTGATTAATGGTTTTGTGTAAGTAGAAGGCTTGTGGTTTTTGTTGTAATTTTAACATTCATCCTTGTGAAGGAGGATCTTTGTAGGCCATGGATTTTTAAACATGGAATTCCTGAAATATATTGTGTTCAACTTGTTCTTGTCCATAGTAGGGTTATACATTTGTGATGAGTGCCCTAATGGCCATTGCAATCACTTGATTGCTGCAGGGTTTGAAAGCCCTGAAATGTGGTCGAGTGTTATATGTTTGTGACAAGTTGAAAACATGAATTGTGGATTGTGGTGTTGTTATGCCTTGAAATTATGTGGTTCGGTGTCATATGTTTGTGGTAAGTGAAAAATGAGTTGTAGG

Fln Alignment:

AllPineV4_rep_c73891___MASAETTAEPVANNVVKEKKPRASKGSKPPPSHPTYLQMITEAITSLKERTGSSQYAIAGYIGKKYQSQLPANFKKVLAVQLRNLAKSGKLTKVKNSFKLSEEL
C0PTL2_______________MASAETTAEPVANNVVKEKKPRASKGPKPPPSHPTYLQMITEAITSLKERTGSSQYAISAYISSKYQSHLPANFKKILTVQLRNLAKSGKLTKVKNSFKLSEEL

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
1124	85		14		0.993533
1125	14		85		0.993533
1149	85			14	0.993533
1154			14	85	0.993533
1157	14		85		0.993533
1161	85	14			0.993533
1165	85		14		0.993533
1166	85		14		0.993533
1170	85	14			0.993533
1171	85		14		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain