SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene62286

Length: 252 nt

Origin of reads: Biogeco1 v2

UniGene Fasta

>sp_v2.0_unigene62286
TGCCAATCAAACCTGATTATGCTGTGTGGGGATCTCTGCTTGGTGCTTGCAGAACCCATAACAACACAGAGGTAGGAAAACAGGCAGCAGAAGTCCTTCTCAAAATAGACCCTGATAATGCTGCTGGTTATGTGATACTCTCAAACATCTATGCAGCAGCTGGCAGGTGGGATGATGTAGAATTGGTGCGGAGGTTGATGAAAGATAGAGGGGTGAAAAAGACGCCAGGACGCAGCTGGATTGAGGTCAATA

Ace file of the UniGene sp_v2.0_unigene62286

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%
Blast2go	pentatricopeptide repeat protein 79	-	-	6.35937e-36	78%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Lipase, GDSL	IPR001087	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Zinc finger-XS domain	IPR005381	-	-
Sma3	Uncharacterised protein family UPF0497, trans-membrane plant	IPR006702	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAE0

Fln msg: Distance to subject end: 126 aas, your sequence is shorter than subject: 83 - 246

Fln protein: PIKPDYAVWGSLLGACRTHNNTEVGKQAAEVLLKIDPDNAAGYVILSNIYAAAGRWDDVELVRRLMKDRGVKKTPGRSWIEVN

Protein Length: 84

Fln nts: TGCCAATCAAACCTGATTATGCTGTGTGGGGATCTCTGCTTGGTGCTTGCAGAACCCATAACAACACAGAGGTAGGAAAACAGGCAGCAGAAGTCCTTCTCAAAATAGACCCTGATAATGCTGCTGGTTATGTGATACTCTCAAACATCTATGCAGCAGCTGGCAGGTGGGATGATGTAGAATTGGTGCGGAGGTTGATGAAAGATAGAGGGGTGAAAAAGACGCCAGGACGCAGCTGGATTGAGGTCAATA

Fln Alignment:

AllPineV4_rep_c73789___PIKPDYAVWGSLLGACRTHNNTEVGKQAAEVLLKIDPDNAAGYVILSNIYAAAGRWDDVELVRRLMKDRGVKKTPGRSWIEV
D5AAE0_______________PFAPDANVWGALLGACRMYGNIDLGKHAAECLFQLEPHNAAKYVLLSNIYAAAGRWDDVAKVRKIMKDRGVQKQPGCSWIEV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain