SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene62242

Length: 281 nt

UniGene Fasta

>sp_v2.0_unigene62242
GCCTGCAGAATTCATGGCAATTTTAAGCTAGCAGAACATGTAGCCAAACATCTTTTTTCCTTAAAGCCCGAATGTGGTGGTTATTATGTGCTACTGTCAAATATTTATGCAGCAGCTGGCAGGTGGGATGATGCAGCAAAGGTGCGAACAATGATGAAAGATAAGGGATTGAAAACGACACCAGCACGTAGCTTCATTGAGGTAAATAATGGGATTCATTCATTCGTTGTAGGGGACGAGTTACATCCTCATTCTAAGAAAATTTATGCAAAGTTGGAGGC

Ace file of the UniGene sp_v2.0_unigene62242

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9LN01.1\|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070 gb\|AAF79838.1\|AC026875_18 T6D22.15 [Arabidopsis thaliana] gb\|AEE28239.1\| pentatricopeptide repea	-	-	4.0e-23	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Blast2go	pentatricopeptide repeat-containing protein at1g08070-like	-	-	3.55616e-33	73%

Source	InterPros	Term	Type	Identity
Sma3	Serine/threonine dehydratase, pyridoxal-phosphate-binding site	IPR000634	-	-
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Uncharacterised protein family Cys-rich	IPR006461	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ADG9

Fln msg: Distance to subject end: 101 aas, your sequence is shorter than subject: 93 - 312

Fln protein: ACRIHGNFKLAEHVAKHLFSLKPECGGYYVLLSNIYAAAGRWDDAAKVRTMMKDKGLKTTPARSFIEVNNGIHSFVVGDELHPHSKKIYAKLE

Protein Length: 94

Fln nts: GCCTGCAGAATTCATGGCAATTTTAAGCTAGCAGAACATGTAGCCAAACATCTTTTTTCCTTAAAGCCCGAATGTGGTGGTTATTATGTGCTACTGTCAAATATTTATGCAGCAGCTGGCAGGTGGGATGATGCAGCAAAGGTGCGAACAATGATGAAAGATAAGGGATTGAAAACGACACCAGCACGTAGCTTCATTGAGGTAAATAATGGGATTCATTCATTCGTTGTAGGGGACGAGTTACATCCTCATTCTAAGAAAATTTATGCAAAGTTGGAGGC

Fln Alignment:

AllPineV4_rep_c73715___ACRIHGNFKLAEHVAKHLFSLKPECGGYYVLLSNIYAAAGRWDDAAKVRTMMKDKGLKTTPARSFIEVNNGIHSFVVGDELHPHSKKIYAKLE
D5ADG9_______________SCRIHCNIELGERVAELLLNLDPDNAGYYVLLSNIYAAAGRWDDVAKVRKMMKEKDVKKSPGCSLIEVNNKLHSFVVGDISHPQTEAIYAMLE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain