SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene62215

Length: 370 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene62215
TAAAGAAGGGCCCTTGGACTCCTGAGGAAGACAAAGTTCTCGTCAATTACATTCAGAAAAATGGGCATGGCAGTTGGCGTGCTCTTCCCAAGCTTGCTGGGCTTCTTCGTTGTGGGAAGAGCTGCCGATTGCGTTGGACGAATTATCTGAAACCTGATATCAGACGAGGCTCCTTTACCGAAGAAGAAGAGCGAACTATTATTCGGCTGCATGCAATTTTGGGAAACAGATGGTCTGTCATAGCGTCACAGCTGTTTGGGAGAACAGACAATGAAGTCAAGATTTTGGAATACCCATCTGAAAAAGCGTTTGTTAAAGATGGGGATCGATCCTTCAACCCATGCGCTTAGAATGGACGCCAATGACCCTG

Ace file of the UniGene sp_v2.0_unigene62215

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Transcription factor MYB101 n=1 Tax=Lotus japonicus RepID=Q84PP5_LOTJA	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	76%
Blast2go	r2r3-myb transcription	-	-	90%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to jasmonic acid stimulus	GO:0009753	Biological Process	0.0	90%
Blast2go	response to salicylic acid stimulus	GO:0009751	Biological Process	0.0	90%

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Peptidase C48, SUMO/Sentrin/Ubl1	IPR003653	-	-
Sma3	Transposon, En/Spm-like	IPR004242	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3	Myb transcription factor	IPR015495	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PSI2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 346 aas, atg_distance in limit (1-15): atg_distance = 13, W2: There is no M at the beginning, your sequence is shorter than subject: 116 - 481

Fln protein: KKGPWTPEEDKVLVNYIQKNGHGSWRALPKLAGLLRCGKSCRLRWTNYLKPDIRRGSFTEEEERTIIRLHAILGNRWSVIASQLFGRTDNEVKILEYPSEKAFVKDGDRSFNPCA*

Protein Length: 117

Fln nts: TAAAGAAGGGCCCTTGGACTCCTGAGGAAGACAAAGTTCTCGTCAATTACATTCAGAAAAATGGGCATGGCAGTTGGCGTGCTCTTCCCAAGCTTGCTGGGCTTCTTCGTTGTGGGAAGAGCTGCCGATTGCGTTGGACGAATTATCTGAAACCTGATATCAGACGAGGCTCCTTTACCGAAGAAGAAGAGCGAACTATTATTCGGCTGCATGCAATTTTGGGAAACAGATGGTCTGTCATAGCGTCACAGCTGTTTGGGAGAACAGACAATGAAGTCAAGATTTTGGAATACCCATCTGAAAAAGCGTTTGTTAAAGATGGGGATCGATCCTTCAACCCATGCGCTTAGAATGGACGCCAATGACCCTG

Fln Alignment:

AllPineV4_rep_c73667___KKGPWTPEEDKVLVNYIQKNGHGSWRALPKLAGLLRCGKSCRLRWTNYLKPDIRRGSFTEEEERTIIRLHAILGNRWSVIASQLFGRTDNEVK
C0PSI2_______________KKGPWTPEEDQILISYINKHGHGNWRALPKQAGLMRCGKSCRLRWTNYLRPDIKRGNFSLKEEQTIIHLHQILGNRWSAIASHLPGRTDNEIK

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain