SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene62205

Length: 360 nt

UniGene Fasta

>sp_v2.0_unigene62205
CATAATGTCAAGGAAGAACAAAAGGAGTCACCTTCTCTGTCATCACCGTGTGACGTTGGCTGTTGCTTTGGGCTTATTAGCACCCCACCTGGAGTGCCTATCCAGGTTATGAAGAACCTTCGCATGTGCGGAGATTGCCACATCGTGACCAAGTTTATCTCCAAGATTGTCGAGCGAGAGATTATGTTAGGGATGCAAATCGATTCCATAGATTCAAATATGGTCTTTGCTCTTGTGGGGATTACTGGTGATGTAATTGAATCAAGAAGTGAGAGTGATTCCCTAAATAGATCCATCTCAAGGAGTACCTTGGCAATAATCTGGCTTTTGATATTATCATTGCCCCAGAACATTCAAGTG

Ace file of the UniGene sp_v2.0_unigene62205

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Selenium-binding protein-like n=1 Tax=Oryza sativa Japonica Group RepID=Q8LI18_ORYSJ	-	-	4.0e-19	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Blast2go	pentatricopeptide repeat-containing protein at3g23330-like	-	-	2.63376e-21	71%

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAE0

Fln msg: Overlapping hits, possible frame ERROR between 189 and 186, your sequence is shorter than subject: 84 - 246

Fln protein: HNVKEEQKESPSLSSPCDVGCCFGLISTPPGVPIQVMKNLRMCGDCHIVTKFISKIVEREIxxxDANRFHRFKYGLCSCGDYW*

Protein Length: 85

Fln nts: CATAATGTCAAGGAAGAACAAAAGGAGTCACCTTCTCTGTCATCACCGTGTGACGTTGGCTGTTGCTTTGGGCTTATTAGCACCCCACCTGGAGTGCCTATCCAGGTTATGAAGAACCTTCGCATGTGCGGAGATTGCCACATCGTGACCAAGTTTATCTCCAAGATTGTCGAGCGAGAGATTxxxxxxxxxGATGCAAATCGATTCCATAGATTCAAATATGGTCTTTGCTCTTGTGGGGATTACTGGTGATGTAATTGAATCAAGAAGTGAGAGTGATTCCCTAAATAGATCCATCTCAAGGAGTACCTTGGCAATAATCTGGCTTTTGATATTATCATTGCCCCAGAACATTCAAGTG

Fln Alignment:

AllPineV4_rep_c73649___HNVKEEQKESPSLSSPCDVGCCFGLISTPPGVPIQVMKNLRMCGDCHIVTKFISKIVEREIMxRDANRFHRFKYGLCSCGDYW
D5AAE0_______________HDVEMEQKEHSLYHHSEKLAIAFGLISTLPGLPVRIIKNLRVCGDCHTATKFISKIVEREIIxRDANRFHHFKDGLCSCGDYW

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain