SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene62110

Length: 361 nt

Origin of reads: Biogeco1 v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene62110
TATTCTGACATTATCACAGTTCCTGGTTTGGTGAATGTGGACTTTGCAGATGTGAAAGCCATTATGAAGAATTCAGGGACAGCCATGCTTGGGGTGGGAATTTCATCTGGTAAAAACCGTGCAGAGGAAGCAGCTCAACAGGCCACCTCAGCTCCTCTGATAGAAAGATCAATTGAGCGTGCCACTGGGGTTGTGTATAATATAACTGGAGGAAAGGACATGACATTGCAAGAAGTAAAGAGAGTCTCACAAGTAGTGACTAGTTTGGCAGACCCATCGGCAAATATTATATTTGGAGCTGTCGTTGATGAAAGGTATAGAGGAGAGGTTCATGTGACTATTATTGCAACAGGATTTTCCC

Ace file of the UniGene sp_v2.0_unigene62110

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	plastid division protein [Medicago truncatula]	-	-	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	cell division protein	-	-	94%

Source	InterPros	Term	Type	Identity
Sma3	Cell division protein FtsZ	IPR000158	-	-
Sma3	Tubulin/FtsZ, GTPase domain	IPR003008	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-
Sma3	Tubulin/FtsZ, 2-layer sandwich domain	IPR018316	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PSV8

Fln msg: Distance to subject end: 45 aas, your sequence is shorter than subject: 120 - 439

Fln protein: YSDIITVPGLVNVDFADVKAIMKNSGTAMLGVGISSGKNRAEEAAQQATSAPLIERSIERATGVVYNITGGKDMTLQEVKRVSQVVTSLADPSANIIFGAVVDERYRGEVHVTIIATGFS

Protein Length: 121

Fln nts: TATTCTGACATTATCACAGTTCCTGGTTTGGTGAATGTGGACTTTGCAGATGTGAAAGCCATTATGAAGAATTCAGGGACAGCCATGCTTGGGGTGGGAATTTCATCTGGTAAAAACCGTGCAGAGGAAGCAGCTCAACAGGCCACCTCAGCTCCTCTGATAGAAAGATCAATTGAGCGTGCCACTGGGGTTGTGTATAATATAACTGGAGGAAAGGACATGACATTGCAAGAAGTAAAGAGAGTCTCACAAGTAGTGACTAGTTTGGCAGACCCATCGGCAAATATTATATTTGGAGCTGTCGTTGATGAAAGGTATAGAGGAGAGGTTCATGTGACTATTATTGCAACAGGATTTTCCC

Fln Alignment:

AllPineV4_rep_c73447___SDIITVPGLVNVDFADVKAIMKNSGTAMLGVGISSGKNRAEEAAQQATSAPLIERSIERATGVVYNITGGKDMTLQEVKRVSQVVTSLADPSANIIFGAVVDERYRGEVHVTIIATGFS
C0PSV8_______________SDIITIPGLVNVDFADVKAVMSNSGTAMLGVGVSSGKNRAEEAAQQATSAPLIERSIERATGVVYNITGGKDLTLQEVNKVSQVVTSLADPSANIIFGAVVDDRYAGEIHVTIIATGFS

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
196		33		66	0.997476
197	33		66		0.997476
201			33	66	0.997464

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain