SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene62070

Length: 419 nt

UniGene Fasta

>sp_v2.0_unigene62070
CGTCGTGACCTTGGCTGTCACTCATTTTCGGCCATCAGAGCTTCTGAAGATTCTTACTCCACAAATTGAGCCTTTAACAGAACAGCAATCATTCGCAGTATCTAGCTTGAAACTGTCATCACAGCAGGCAGAGGATGCACTTTCCCAAGGCATGGAAGCACTTCAGCAGTCCCTAGTTGACACTCTGGCAGGAGGTTCATTGGGTGCACCAAATGTTGCCAACTACATGGGGCAAATGGCAATGGCAATGGGAAAGCTCGGGATGCTTGAGAGCTTTGTACATCAGTTAATGGTCTGTAAAACAGGCAGACAATCTCCGTCAACAAGCTCTGCAGCAGATGCAAGTATCCTTACAACCCGTCAAGCAGCTCGAGGCCTCCTGGCTATGGGGGATTACTTTACCAGACTACGGGCCCTTA

Ace file of the UniGene sp_v2.0_unigene62070

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	sp=Transcription factor HBP-1b(c38); Triticum aestivum (Wheat).	-	-	61%
Blast2go	bzip transcription factor-like protein	-	-	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	73%

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	Basic-leucine zipper domain	IPR004827	-	-
Sma3	bZIP transcription factor, bZIP-1	IPR011616	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	DNA/RNA non-specific endonuclease, active site	IPR018524	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: P23923

Fln msg: STOP codon was not found. Distance to subject end: 10 aas, your sequence is shorter than subject: 139 - 332

Fln protein: VVTLAVTHFRPSELLKILTPQIEPLTEQQSFAVSSLKLSSQQAEDALSQGMEALQQSLVDTLAGGSLGAPNVANYMGQMAMAMGKLGMLESFVHQLMVCKTGRQSPSTSSAADASILTTRQAARGLLAMGDYFTRLRAL

Protein Length: 140

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTCGGCCATCAGAGCTTCTGAAGATTCTTACTCCACAAATTGAGCCTTTAACAGAACAGCAATCATTCGCAGTATCTAGCTTGAAACTGTCATCACAGCAGGCAGAGGATGCACTTTCCCAAGGCATGGAAGCACTTCAGCAGTCCCTAGTTGACACTCTGGCAGGAGGTTCATTGGGTGCACCAAATGTTGCCAACTACATGGGGCAAATGGCAATGGCAATGGGAAAGCTCGGGATGCTTGAGAGCTTTGTACATCAGTTAATGGTCTGTAAAACAGGCAGACAATCTCCGTCAACAAGCTCTGCAGCAGATGCAAGTATCCTTACAACCCGTCAAGCAGCTCGAGGCCTCCTGGCTATGGGGGATTACTTTACCAGACTACGGGCCCTTA

Fln Alignment:

AllPineV4_rep_c73349___FRPSELLKILTPQIEPLTEQQSFAVSSLKLSSQQAEDALSQGMEALQQSLVDTLAG-----GSLGAPNVANYMGQMAMAMGKLGMLESFVHQLMVCKTGRQSPSTSSAADASILTTRQAARGLLAMGDYFTRLRAL
P23923_______________FRPSELLKLLSTQLEPLTEQQLSGICNLQQSSQQAEDALSQGMEALQQSLAETLAGSIGSSGSGSTGNVANYMGQMAMAMGKLGTLENFLSQ---ADNLRQQTLQQM---QRILTTRQSARALLVISDYSSRLRAL

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
317	33			66	0.997464
319	33	66			0.997467
320			66	33	0.997467

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain