SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene61963

Length: 618 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene61963

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Membrane protein n=1 Tax=Zea mays RepID=B6UFS0_MAIZE	-	-	5.0e-10	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Blast2go	membrane protein	-	-	2.02306e-13	91%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	Sugar/inositol transporter	IPR003663	-	-
Sma3	Protein of unknown function DUF1423, plant	IPR004082	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Endoplasmic reticulum, stress-associated Ramp4	IPR010580	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-

Full-Lengther Next Prediction

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
122	66		33		0.997452
123	16		33	50	1.0
124			16	83	0.994513
125		16	33	50	1.0
126	83		16		0.994512
127		20	80		0.995493
128			16	83	0.994512
129		20		80	0.995493
130	14	85			0.993533
133		25		75	1.0
137	25	75			1.0
138		25		75	1.0
141			85	14	0.993533
142		75	12		0.975346
143	71		28		1.0
144	71	28			1.0
145			71	28	1.0
148		25		75	1.0
149	25			75	1.0
153	14	14		71	0.984337
154	14		85		0.993533
251	85			14	0.993533
254		12		87	0.992559
260	12			87	0.992554
261	12	87			0.992554
262	12			87	0.992554
269	14		85		0.993533
270			85	14	0.993533
271		14		85	0.993533
272		14	85		0.993533
273	14		85		0.993533
274			14	85	0.993533
277	85		14		0.993533
282		83		16	0.994512
283			16	83	0.994512
291	50		50		1.0
296	80		20		0.995493
314		80		20	0.995499
316		20		80	0.995499
456		66	33		0.997454

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain