SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene61947

Length: 898 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene61947

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	HVA22-like protein i [Arabidopsis thaliana] sp\|Q8LE10.2\|HA22I_ARATH RecName: Full=HVA22-like protein i; Short=AtHVA22i gb\|ABF19006.1\| At5g42560 [Arabidopsis thaliana] gb\|AED94826.1\| HVA22-like protein i [Arabidopsis thaliana]	-	-	4.99983e-42	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Blast2go	hva22-like protein i	-	-	0.0	68%

Source	InterPros	Term	Type	e value	Identity
Sma3	TB2/DP1/HVA22-related protein	IPR004345	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
172	75		25		0.996486
174	50	25	25		0.995563
175	50		50		1.0
176	50		25	25	0.995563
177			50	50	1.0
180		25		75	0.996479
181		75		25	0.996479
182	75			25	0.99649
188	66		33		0.997452
192	33		66		0.997452
578	33		66		0.997452
579		66		33	0.997452
580	66		33		0.997452
581	66			33	0.997452
777		25	75		0.996473
779	75		25		0.996473
780	25	75			0.996473
781		75	25		0.996473
784	25	75			0.996473
788		25	75		0.996473
789	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain