SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene61944

Length: 718 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene61944

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Leucine-rich repeat receptor-like protein kinase (Fragment) n=4 Tax=Arabidopsis RepID=C0LGN6_ARATH	-	-	1.0e-34	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	44%
Blast2go	kinase-like protein	-	-	6.45212e-40	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	signal transduction	GO:0007165	Biological Process	6.45212e-40	82%
Blast2go	transmembrane receptor protein serine/threonine kinase activity	GO:0004675	Molecular Function	6.45212e-40	82%
Blast2go	protein binding	GO:0005515	Molecular Function	6.45212e-40	82%
Blast2go	plasma membrane	GO:0005886	Cellular Component	6.45212e-40	82%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Uncharacterised protein family UPF0497, trans-membrane plant subgroup	IPR006459	-	-
Sma3	Uncharacterised protein family UPF0497, trans-membrane plant	IPR006702	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Full-Lengther Next Prediction

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
179		33		66	0.997453
216	66	33			0.997452
284	25		75		0.996473
310		25		75	0.996473
395		40		60	1.0
429		44		55	1.0
485			71	28	1.0
507	16		83		0.994512
509		83		16	0.994512
510		83	16		0.994512
512			16	83	0.994512
513			83	16	0.994512
515	16	83			0.994512
517	16			83	0.994512
524	83		16		0.994512
529		83	16		0.994512
531	83	16			0.994512
532			16	83	0.994512
537		20	80		0.995493
567	33		66		0.997453
571	33		66		0.997452
612	33		66		0.997454

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain