SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene61917

Length: 876 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene61917

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Laccase n=2 Tax=Pinus taeda RepID=Q9AUI3_PINTA	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	l-ascorbate oxidase precursor	-	-	76%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Oxidoreductase, molybdopterin-binding domain	IPR000572	-	-
Sma3	Multicopper oxidase, type 1	IPR001117	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Auxin efflux carrier	IPR004776	-	-
Sma3	Bacterial extracellular solute-binding family 1, conserved site	IPR006061	-	-
Sma3	Cupredoxin	IPR008972	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Multicopper oxidase, type 2	IPR011706	-	-
Sma3	Multicopper oxidase, type 3	IPR011707	-	-
Sma3	Leucine-rich repeat 3	IPR011713	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Laccase	IPR017761	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWZ1

Fln msg: Separated hits, possible frame ERROR between 654 and 740, Distance to subject end: 77 aas, your sequence is shorter than subject: 246 - 292

Fln protein: MSLQSARLSSALLVFLLAFVAYLVAVTNADVHNYTFIIRKKTVTRLCNKRIIATVNGQLPGPTIHVRDGDIVNIKAYNKAGYNATLHWHGVEQLRTGWADGPAYVTQCPIPPGGRYTYRFTISEQEGTVWWHAHVSWLRATVHGAFVILPKRGKPYPFPKPRAEVPIVIGDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGEWWNNNPVAVIDEAVRTGGAPNVSDSFTINGQPGDLFPCSRSGI

Protein Length: 247

Fln nts: AATGGGGATGATACCAGTATTGCCTTCAGTTCGGCACTGAGAGATCCATTTCTTTCAATGTTGAGACAGTGAGTAGTATTAGTTTGTTATCTCTTTCAGGAATATATTGTGCTTGCAGGATCTTTAGTTTCTGCAACA_-_ATGTCGTTGCAATCAGCGCGTCTATCTTCTGCTCTCCTTGTTTTTCTACTAGCATTTGTTGCTTATTTAGTTGCTGTAACAAACGCAGATGTCCACAATTATACCTTCATTATTAGGAAGAAGACAGTTACCAGGCTGTGCAATAAGCGTATTATCGCCACCGTCAATGGACAGCTACCAGGCCCAACTATTCATGTACGTGATGGAGACATTGTTAATATCAAAGCTTATAACAAAGCTGGGTACAATGCCACTCTTCACTGGCATGGAGTCGAGCAGTTGCGTACAGGATGGGCCGATGGACCTGCATATGTTACACAGTGCCCCATTCCACCAGGTGGTCGTTATACATACAGATTCACCATTTCTGAACAGGAAGGCACAGTGTGGTGGCACGCTCATGTGTCATGGCTCCGAGCTACGGTGCATGGAGCTTTCGTAATCCTTCCTAAGAGAGGAAAACCATATCCCTTTCCTAAACCCCGTGCTGAAGTTCCTATTGTAATAGGTGATTAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGGAGAGTGGTGGAACAATAACCCAGTTGCTGTTATAGATGAAGCAGTTCGTACAGGTGGTGCACCTAATGTGTCTGATTCTTTCACAATAAACGGACAGCCAGGAGATCTGTTCCCCTGCTCTCGGTCTGGTATTAA

Fln Alignment:

AllPineV4_rep_c72675___TNADVHNYTFIIRKKTVTRLCNKRIIATVNGQLPGPTIHVRDGDIVNIKAYNKAGYNATLHWHGVEQLRTGWADGPAYVTQCPIPPGGRYTYRFTISEQEGTVWWHAHVSWLRATVHGAFVILPKRGKPYPFPKPRAEVPIVIGDYxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGEWWNNNPVAVIDEAVRTGGAPNVSDSFTINGQPGDLFPCSRS
A9NWZ1_______________SNAAIHNYTFIIEKKTVTRLCKQRIIATVNGQLPGPTIHVSNGDTVNIKAYNRAGYNATLHWHGVEQIRTGWADGPAYITQCPIPPGGHYTYRFTISGQEGTVWWHAHVSWLRATVHGAFVIYPKKGKPYPFPKPLAEIPLVIGEWxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGEWWNNNPVAVIDEAVLTGGAPNISDTFTINGQPGDLLPCSSS

SNPs (tot: 4)

Position	A %	G %	T %	Probability
68	66	33		0.997452
307	11	88		0.923564
450	25		75	0.996473
646	66		33	0.997458

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain