SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene61887

Length: 1310 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene61887

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[G] COG1472 Beta-glucosidase-related glycosidases	-	-	3.0e-30	31%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Blast2go	beta-xylosidase alpha-l-arabinofuranosidase 2-like	-	-	0.0	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	Xylan 1,4-beta-xylosidase.	EC:3.2.1.37	-	0.0	73%

Source	KEGGs	Term	Identity
Blast2go	Starch and sucrose metabolism	00500	73%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	73%
Blast2go	Metabolic pathways	01100	73%

Source	GOs	Term	Type	Identity
Blast2go	xylan catabolic process	GO:0045493	Biological Process	73%
Blast2go	xylan 1,4-beta-xylosidase activity	GO:0009044	Molecular Function	73%
Blast2go	cell wall	GO:0005618	Cellular Component	73%
Blast2go	apoplast	GO:0048046	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3		IPR000173	-	-
Sma3	Glycoside hydrolase, family 3, N-terminal	IPR001764	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Glycoside hydrolase family 3 C-terminal domain	IPR002772	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABI5

Fln msg: your sequence is longer than subject: 339 - 304

Fln protein: MIGNYAGTPCKYTTPLQGLSVYTSTIYAPGCANVACEGNDSLLAGAVQTAGNADATVLIVGGDLTLEAEALDRTSLLLPGQQQQLVTQVTAASKGPVVLVIMSGGPFDITFAKDDNKILGILWVGYPGEAGGAAIADVIFGAYNPGGKLPVTWYPEDFAVNVPMTNMNMRPDNTTGYPGRTYRFYTGNTVYSFGYGLSYTKFNHNLVKAPELVSLPLDACTQMKSNSCEALSVTHTKCQGLSLEVHVDVNNVGSRDGSHVLFLFSAPPSSTLKTPQKQLIQFRKVHVHAGATERVLFNLDVCKDLSIVERTGTRMLPVGSHLLHIGDLQHSVSVQISN*

Protein Length: 340

Fln nts: GCACTTGTCATTACTGCCAGCAATGTGTATTCCTTGGCCGTCATTGGGCCCAATGCAAATGTAACCCGAACA_-_ATGATCGGAAACTATGCTGGCACACCATGTAAATACACGACCCCCCTTCAAGGACTTTCTGTGTACACTTCAACTATCTATGCACCTGGCTGTGCAAACGTTGCATGCGAAGGAAACGATAGTCTATTAGCTGGGGCTGTTCAGACTGCAGGCAATGCAGATGCAACGGTGTTAATAGTAGGTGGAGACTTGACATTGGAGGCAGAGGCTCTAGACAGAACAAGTTTGCTGTTGCCTGGCCAGCAACAACAGCTCGTAACCCAAGTTACTGCTGCATCCAAGGGACCTGTAGTTCTTGTGATCATGTCTGGAGGTCCTTTTGATATAACATTTGCAAAAGATGATAACAAGATTTTAGGTATTCTTTGGGTAGGCTATCCCGGAGAAGCTGGTGGAGCAGCCATTGCAGATGTGATATTTGGAGCGTACAATCCAGGTGGGAAGCTGCCTGTGACTTGGTACCCAGAGGATTTTGCTGTCAACGTCCCTATGACCAACATGAACATGAGGCCTGATAACACCACAGGTTACCCTGGCCGGACTTACAGATTCTACACCGGAAACACTGTTTACTCGTTCGGATACGGACTGAGCTATACAAAATTCAACCACAATCTAGTCAAAGCGCCCGAACTGGTCTCTCTTCCTCTGGATGCATGTACTCAGATGAAATCAAATTCTTGTGAGGCTCTCAGTGTGACCCACACTAAATGCCAGGGCTTGTCGCTGGAAGTTCATGTTGATGTGAATAATGTTGGTTCCAGGGATGGATCCCACGTATTGTTCTTATTCTCTGCACCCCCATCCAGTACTCTCAAAACCCCACAGAAGCAATTGATTCAATTCAGAAAGGTCCATGTCCATGCAGGAGCCACGGAAAGGGTCCTTTTCAATCTTGATGTATGCAAGGACCTCAGCATTGTTGAGCGGACTGGAACCAGGATGTTGCCAGTGGGGTCTCATCTTCTTCACATTGGTGATCTGCAACACTCTGTTTCAGTTCAAATAAGCAACTAA___CTAATTCACATGGAGGGAAATCTGGTTCTCTGCTTCCGCAAGGGCACTGAACTTGATCAAACTGGGCTCCTTAGCCCACAAGTAATTGATATTTACCATTCTCCTTGAGCAACTTCGCGGACAGATTTAGGTTTCCTACTACGATTGTTTACTCTAATTTAGAATACTTTAAGAAGAGTGCCTTCTCAATGAGAGGGTGTTAATTGCATTTGTCCATCAAA

Fln Alignment:

AllPineV4_rep_c72454___AVQTAGNADATVLIVGGDLTLEAEALDRTSXXXXXXXXXXVTQVTAASKGPVVLVIMSGGPFDITFAKDDNKILGILWVGYPGEAGGAAIADVIFGAYNPGGKLPVTWYPEDFAVNVPMTNMNMRPDNTTGYPGRTYRFYTGNTVYSFGYGLSYTKFNHNLVKAPEL---VSLPLDACTQMKSNSCEALSVTHTKCQGLSLEVHVDVNNVGSRDGSHVLFLFSAPPSSTLKTPQKQLIQFRKVHVHAGATERVLFNLDVCKDLSIVERTGTRMLPVGSHLLHIGDLQHSVSV
D5ABI5_______________AVETAKKVDEVIVVVGLDQTQEKEERDRIKLTLPGQQENLVYQVSRAAKRPVVFVILSGGPVDVSFAVNDPQISSIIWAGYPGQAGGQALAEIIFGDYNPGGRLPMTWYPQDF-VKIPMTDMNMRPNHDTGYPGRTYRFYTGKKVFEFGQGLSYSAYSYNFSSTTIQKIDLNVTMEHFEALGNRGKGHVRVENTPCRKLKFRSSIFVRNHDKMDGRHAVLLYSKSPATHKGAPQKQLIGFRSVHVQGKHTAKVTFVVKPCDHFSTVEENGQRLLAIGSHSLIVGDTQYPVSL

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
802	14	85			0.993533
804			85	14	0.993533
806			85	14	0.993533
1050	50			50	1.0
1276		75		25	0.996477
1285	25		75		0.996474
1287	25		75		0.996475
1288	25	25		50	0.995595

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain