SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene61886

Length: 926 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene61886 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Rsm1 domain containing protein	-	-	0.0001	28%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Blast2go	zinc ion binding protein	-	-	0.0	68%

Source	GOs	Term	Type	Identity
Blast2go	negative regulation of translation	GO:0017148	Biological Process	68%
Blast2go	DNA endoreduplication	GO:0042023	Biological Process	68%
Blast2go	negative regulation of transcription, DNA-dependent	GO:0045892	Biological Process	68%
Blast2go	translation repressor activity	GO:0030371	Molecular Function	68%
Blast2go	cytosol	GO:0005829	Cellular Component	68%
Blast2go	phragmoplast	GO:0009524	Cellular Component	68%
Blast2go	nucleus	GO:0005634	Cellular Component	68%

Source	InterPros	Term	Type	e value	Identity
Sma3	Baculoviral inhibition of apoptosis protein repeat	IPR001370	-	0.0	-
Sma3	Zinc finger, C3HC-like	IPR012935	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
405		12		87	0.992554
406		12	87		0.992554
407	87	12			0.992554
413	85		14		0.993533
437	20		80		0.995493
438	25	75			0.996473
560			20	80	0.995493
564	20		80		0.995493
567		80	20		0.995493
570		20		80	0.995493
574		80	20		0.995493
576		20		80	0.995493
577	20	80			0.995493
579	80		20		0.995493
581	80	20			0.995493
638	75	25			0.996473
642			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain