SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene61867

Length: 520 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene61867
CGTCGTGACCTTGGCTGTCACTCATATATGGAGGATTTTATGGGAAATGATGGCGATTCTTGGGAAGAATGGATGGGATGGGAAGGAGCTGGAACCCTTGATTATAACTCTCACATTAACATTTATGCCTGATCAGATCTTCATCATGAACTGTATCCATGTCAGTTTACTTGTAAACAAAGATGGCCTCTCCATGACCATCCCCGTTCATGGGCTGCCTATGAAACCCTTGCTTTTGTCACCTTAACAACTGCATGAGAAAGCTCATAGAGTTTCTTCATTGGCATCTTGTAAATATGATATGTCCTTTTCTACTTGTACAGCTGATTTTTATTTCTCCTGCCTCGGCTCCCATAGCACAAAGGACTTCTTGACCCAGTTGCTGGAACAGCTTTTTGAGGTCTGAATGAGTCATTTGCTTTGCTCATGGGTTCTGATTAATCTCTCAATTACTAGTGCATAACTTTGGTATCTCTTTCTTGTCACTATCATGTCAATGTTATGGGATCTGCTCTGAGAA

Ace file of the UniGene sp_v2.0_unigene61867

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SPB6_PHYPA	-	-	9.0e-07	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Blast2go	unknown [Picea sitchensis]	-	-	1.44381e-11	77%

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	Heat shock protein DnaJ	IPR003095	-	-
Sma3		IPR015609	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NS05

Fln msg: your sequence is shorter than subject: 44 - 148

Fln protein: RRDLGCHSYMEDFMGNDGDSWEEWMGWEGAGTLDYNSHINIYA*

Protein Length: 45

Fln nts: CGTCGTGACCTTGGCTGTCACTCATATATGGAGGATTTTATGGGAAATGATGGCGATTCTTGGGAAGAATGGATGGGATGGGAAGGAGCTGGAACCCTTGATTATAACTCTCACATTAACATTTATGCCTGA___TCAGATCTTCATCATGAACTGTATCCATGTCAGTTTACTTGTAAACAAAGATGGCCTCTCCATGACCATCCCCGTTCATGGGCTGCCTATGAAACCCTTGCTTTTGTCACCTTAACAACTGCATGAGAAAGCTCATAGAGTTTCTTCATTGGCATCTTGTAAATATGATATGTCCTTTTCTACTTGTACAGCTGATTTTTATTTCTCCTGCCTCGGCTCCCATAGCACAAAGGACTTCTTGACCCAGTTGCTGGAACAGCTTTTTGAGGTCTGAATGAGTCATTTGCTTTGCTCATGGGTTCTGATTAATCTCTCAATTACTAGTGCATAACTTTGGTATCTCTTTCTTGTCACTATCATGTCAATGTTATGGGATCTGCTCTGAGAA

Fln Alignment:

AllPineV4_rep_c72338___YMEDFMGNDGDSWEEWMGWEGAGTLDYNSHINIYA
A9NS05_______________YVEGLTEDDDDSWEEWMGWEGAGTLDYSSHINIYA

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
308	33			66	1.0
310	33	66			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain