SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene61814

Length: 550 nt

Origin of reads: Biogeco1 v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene61814
TGGGGGACTTCCTCATAGGTGGCCAATCAACAGGATTTTGCAGTGGAGGTTGTGCTGTCCTTGTGGGTTCCGGAAGCTGTGTGGTTCTGGTCTCCGGGATTGTGGCGCAAATCAATGAAGCTATTGGTGCCTCGGGGCTTGCCAGCCAGGAATGTAAAAGTGTAGTCTCGCAATATGGAGATTTAATAATGGAGCTTTTGATGACACAGACAAGTCCTGAAAAGGTCTGTTCCAAAATAGGCTTATGCTCATTTGATGGTAGCAGGGATGTCAGTATGCGAATTGCTAGTGTTCTTGAGAGAGATAACGAGGCAACATCAGCCAGTAGCAGTGGCATGTGTGCTGCTTGTGAGATGGCAGTGGTATGGGCAAAGATCAGCTAAACGAACTGTTTCCAAGCCCTAATTATGACGTCTGTGGATTGCAATAACTTATCAAGCATGCCCACTGTGTCATTTACAATTGGTGAAAGAACTTTTGATCTCACTCCTGAGCAGTATATTCTTAAAGTTGGCGAGGGTTCTGCAGCTCAATGTATTAGTGGTTTCAT

Ace file of the UniGene sp_v2.0_unigene61814

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SapB_2 multi-domain protein	-	-	3.0e-11	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%
Blast2go	aspartic protease	-	-	0.0	68%

Source	GOs	Term	Type	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	68%
Blast2go	response to salt stress	GO:0009651	Biological Process	68%
Blast2go	endopeptidase activity	GO:0004175	Molecular Function	68%
Blast2go	vacuole	GO:0005773	Cellular Component	68%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase A1	IPR001461	-	-
Sma3	Actinin-type, actin-binding, conserved site	IPR001589	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Saposin-like type B, 1	IPR007856	-	-
Sma3	Saposin-like type B, 2	IPR008138	-	-
Sma3	Saposin B	IPR008139	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3	Saposin-like	IPR011001	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKS9

Fln msg: Distance to subject end: 39 aas, your sequence is shorter than subject: 182 - 509

Fln protein: GDFLIGGQSTGFCSGGCAVLVGSGSCVVLVSGIVAQINEAIGASGLASQECKSVVSQYGDLIMELLMTQTSPEKVCSKIGLCSFDGSRDVSMRIASVLERDNEATSASSSGMCAACEMAVVWAKIS*TNCFQALIMTSVDCNNLSSMPTVSFTIGERTFDLTPEQYILKVGEGSAAQCISGF

Protein Length: 183

Fln nts: TGGGGGACTTCCTCATAGGTGGCCAATCAACAGGATTTTGCAGTGGAGGTTGTGCTGTCCTTGTGGGTTCCGGAAGCTGTGTGGTTCTGGTCTCCGGGATTGTGGCGCAAATCAATGAAGCTATTGGTGCCTCGGGGCTTGCCAGCCAGGAATGTAAAAGTGTAGTCTCGCAATATGGAGATTTAATAATGGAGCTTTTGATGACACAGACAAGTCCTGAAAAGGTCTGTTCCAAAATAGGCTTATGCTCATTTGATGGTAGCAGGGATGTCAGTATGCGAATTGCTAGTGTTCTTGAGAGAGATAACGAGGCAACATCAGCCAGTAGCAGTGGCATGTGTGCTGCTTGTGAGATGGCAGTGGTATGGGCAAAGATCAGCTAAACGAACTGTTTCCAAGCCCTAATTATGACGTCTGTGGATTGCAATAACTTATCAAGCATGCCCACTGTGTCATTTACAATTGGTGAAAGAACTTTTGATCTCACTCCTGAGCAGTATATTCTTAAAGTTGGCGAGGGTTCTGCAGCTCAATGTATTAGTGGTTTCAT

Fln Alignment:

AllPineV4_rep_c71801___GDFLIGGQSTGFXXXXXXXXXXXXXXXXXXXX-IVAQINEAIGASGLASQECKSVVSQYGDLIMELLMTQTSPEKVCSKIGLCSFDGSRDVSMRIASVLERDNEATSASSSGMCAACEMAVVWAKIS*T-NCFQALIMT----------------SVDCNNLSSMPTVSFTIGERTFDLTPEQYILKVGEGSAAQCISGF
B8LKS9_______________GDFLIGGQSTGFCSGGCAAIVDSGTSLLAGPSGIVAQINEAIGASGLASQECKSVVSQYGDLIMELLMAQTNPQKVCSQIGLCLSDGTRDVGMRIASVLEKGNEATSTSSSGMCAACEMAVVWAKNQIARNASKDQIMTYLNQLCDRLPNPNGQAAVDCNNLSSMPTVSFTIGDRSFDLTPDQYILKVGEGSAAQCISGF

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
235		16		83	0.994512
389	75			25	0.996479
390	66			33	0.997464
391	66		33		0.997467
392		66		33	0.997461

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain