SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene61807

Length: 824 nt

Origin of reads: Inia v1 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene61807 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative ribosomal-protein S6 kinase-like protein n=1 Tax=Solanum lycopersicum RepID=Q56R02_SOLLC	-	-	1.0e-37	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Blast2go	ribosomal protein s6	-	-	0.0	80%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	AGC-kinase, C-terminal	IPR000961	-	-
Sma3	Lactate/malate dehydrogenase, N-terminal	IPR001236	-	-
Sma3	Malate dehydrogenase, active site	IPR001252	-	-
Sma3	L-lactate/malate dehydrogenase	IPR001557	-	-
Sma3	Hydroxymethylglutaryl-CoA reductase, class I/II	IPR002202	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Malate dehydrogenase, type 2	IPR010945	-	-
Sma3	Malate dehydrogenase, NAD-dependent, cytosolic	IPR011274	-	-
Sma3	Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal	IPR015955	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Protein kinase, C-terminal	IPR017892	-	-

Full-Lengther Next Prediction

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
592			18	81	0.999994
594		72	9		0.999997
601		18		9	0.999997
605		9	18		0.999997
606	81		18		0.999994
611	8		16	75	0.99999
612	21			78	1.0
613		14	7	78	0.999974
618	83		16		0.999991
719	33		66		0.997455
759		33		66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain