SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene61800

Length: 1015 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene61800

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Caffeoyl-CoA O-methyltransferase n=8 Tax=Pinaceae RepID=CAMT_PINTA	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	caffeoyl o-methyltransferase	-	-	86%

Source	InterPros	Term	Type	e value	Identity
Sma3	O-methyltransferase, family 3	IPR002935	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NSG0

Fln msg:

Fln protein: MDYKSLLQSDALYEYILETSVYPREPEPLKELRELTIKHPWHGMAIPPDEGQFLGLLLKLMNAKNTIEIGVYTGYSLLSTALALPSDGKIIAMDINRANYDIGRPIIEKAGVAHKIDFREVPALPVLDEMVKNEEMHGSFDFAFVDADKGNYLNYHMRLIDLVKVGGLIAYDNTLWQGSVALPPEVAMSEGMSYGEEREHMLELNRALAADPRIEIAQIPIADGVTLCRRLS*

Protein Length: 234

Fln nts: CAAATTCTTCTTCTCAGAGGTTGTCTGAGCAATTTTGACAGAGGGTGGATGCGTTTTGGCTTAACGCTTTTTTCTTTCATTTCTGGAAATGCTCTGTACAGTGTAAGGATATAACATCCAGCTGCAGCAAACGTGAAAGTGGACTGAACTTCAAGGACAGGAGCAGAGTAAGGTTGCGAAGCATCAGAGA_-_ATGGATTACAAAAGTTTGTTGCAGAGCGATGCCCTTTATGAGTATATATTGGAAACCAGCGTGTACCCTCGTGAGCCAGAGCCCTTGAAGGAGCTCCGGGAATTGACTATCAAACATCCCTGGCACGGCATGGCTATTCCTCCAGATGAAGGTCAATTTCTGGGCCTCCTACTGAAGCTGATGAACGCCAAGAACACCATCGAGATTGGGGTGTACACTGGTTACTCACTTCTCAGCACAGCCCTTGCCTTACCCTCTGATGGAAAGATAATAGCGATGGACATTAACAGAGCGAATTATGATATTGGGCGACCTATCATTGAGAAAGCTGGAGTTGCCCACAAAATTGATTTCAGAGAAGTCCCTGCTCTGCCAGTTCTGGATGAAATGGTTAAGAATGAGGAGATGCATGGTTCGTTTGATTTCGCGTTTGTAGATGCTGACAAAGGCAACTATCTGAATTACCACATGCGTCTGATAGATCTGGTGAAGGTCGGAGGATTGATTGCGTATGACAATACTCTGTGGCAAGGATCCGTTGCGCTTCCCCCAGAAGTCGCCATGAGCGAAGGCATGAGTTATGGGGAAGAGAGAGAGCATATGTTAGAACTAAACAGGGCCCTTGCTGCAGACCCTCGCATCGAGATTGCTCAGATCCCAATTGCCGATGGAGTGACGCTGTGCAGGCGCCTTTCTTGA___ACATTATTCAGCGATCTTGTCTTGTATGTGAGAATCTGAAATTGAAATTGCAAGCATAGACAACTCTCGATACATCAATGTTTCCCATTGTTAATGATTTGATTTTACATGAATGTTCATTTCAAG

Fln Alignment:

AllPineV4_rep_c71705___MDYKSLLQSDALYEYILETSVYXXXXXXXXXXXXXTIKHPWHGMAIPPDEGQFLGLLLKLMNAKNTIEIGVYTGYSLLSTALALPSDGKIIAMDINRANYDIGRPIIEKAGVAHKIDFREVPALPVLDEMVKNEEMHGSFDFAFVDADKGNYLNYHMRLIDLVKVGGLIAYDNTLWQGSVALPPEVAMSEGMSYGEEREHMLELNRALAADPRIEIAQIPIADGVTLCRRLS
A9NSG0_______________MDHKSLLQSDALYQYILETSVYPGEPEPLKELRELTAKHPRHLMAIPPDEGQFLRLLLKLMNAKNTIEIGVYTGYSLLSTALALPDEGKIIAMDISRENYDMGRPIIQKAGVAHKIDFREGPALPFLDEMIKNEEMHRSFDFAFVDADKCNYLNYHKRLIDLVKVGGVIAYDNTLWQGSVAVPPEVPMSESMRYG--REHTLELNKALAADPRIEIAQIPIADGVTLCRRLS

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
839	20		80		0.995493
904		85		14	0.993533
923		16	83		0.994512
974		33		66	0.997453
981		66		33	0.997453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain