SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene61784

Length: 2063 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene61784
AATGTATCCCAACCCATTTTTATTTCGTATTTTTAGCCCAGGAAAAATTGTGCTATACTATAAAAAATTCACACCTATCATGGGGACACATCATTTGAATGGACAAAGGGTTCAGCAGCTCCTTGGTTTACTACTCCTATTTTGTGCTGTTATCTGTTCCGGAACATCAATTGGAGTGTCATATGATTCAAAGGACAGTACCCTGCCATCTCCTAAGAAGCTTGTAGAACTGCTGATGAAACATGATCTACTCCATGTTAGGCTCTTGGATGCCAATCCCATTGTTTTGGAAGCTTTATCTGGGACAGGGATTGAGGTGGCTGTGAGTATGAAGTATAAGCAAACGAAGGACATTGGAAAATCGAAGTCACGAGCAGCATTATGGCTGAAGAAAAACGTCATGGGTTTCATGCCTGATACCCTCATAACCAGTATCATTGTTAACCATCAAGGGATATCAGAAGAAGCAGTATCGACATTGCTATCTACTATGAAAGCCATTTATTCTGCTCTTGTGGATGCAAATCTAGATAAGCGTATCAAGGTCACAACCACACTTTCATCCACTTTGATTCAAGATGCATCTAGTGTGCCTCCATCCTCTTCCACCAAGGATTTGAGGTGGGTTCTTCACCCTCTGCTGGCGTTTGTCTCAAAGACAGGTTCTTTTCTGATACTGAACACTGACTTTAACAGAGATTTTGCACATAGTGAAGAAGACCTCATTAACTCTGTAGTCGTTGCTGCCAGAAATGCTATGGCATTTCTTCACTATCCTGATATTCCCATAGTTATTAATGATCAAGGTCTGCTTTCCGAAACAATGAAGACCTTTTTAATGACCAAAAATCTCAGGGATCAAGTTCTTGCCCAAAGCATGAATAGGGCTCGGATATGGACAATAATAGTGAAAATGAGTTCTTTGGACGTTTCTATGCAGAAGGAGTTGAGCAGAGAAGGGGAAGAACTGTTCCGCTCAAACTCTAGGGAGCTTTTGGACAATAAAGCTAACTCTACCAGGAACAAGACAACTGAGTTGGGATCTCAGTTTGATACTTTTCCAACTACACCTATTACAACAACTCCTCCAACTCCGATCACGACCACACCCACAACACCAATAGGAATAACTCCTCCTGCAACAACAATCACACCAACTCCTACTACCCCAATCACAACCCCTACCACCCCAACAGTTACCCCTTACGCCCCTCCCTCAACACCTACCACAACAACACCGACAACCAGCTCAAGCCAAAGTTGGTGTGTAGCAAAGCCTGGTATCCCTGATTCAAGCTTGCAGGTTGCTCTGGACTATGCTTGCGGGCTTGGAGGTGCAGACTGTACAGCAATTCAACAAAGTGGCACGTGCTATAACCCAGATACTGTTTTTTTTCATGCTTGCTATGCTTTTGACAGCTACTACAAGAAGAATGGCATGGCCCCTGGTACTTGTGACTTTGCTGGCAATGCAATTGTGACTACTCAAGATCCAAGTACTGGGACATGCACATTTCCACAAAGCAGTAGCAGTTCATCACTTCTTAATACAAGCATACCTACATCTGGTGGCTTGGGTGGTACTAGCATTCCACCAACATCGGGCAATAATGGTGATGCAACATCCATATTCTTCTGTGTTCCTGTTTTCTTTGCTTTGTTTTCTTTGATTGTATCTATGATGGTCGGAAAACAGCTTTAGATGATATCGATCTCTATTGGGTGAATCGAGGAGAAACATCAAGATGTTTTAGTTGGAATAGCTAGTGTAGACAGAGAGCTAGAGGATGTACAGGAAAAACTCTCAAGAGTTCGATCCCATTTGTCCCAACATTTTTTTTGATGCAATGGGGGGAACGCTAGGAGAGACTTTGAAAATGTGTACACCAGTGCAGTTCAGGTAATTCTTTCACTTTGTAGGAAAGAGAGGTTAAATATAGTTGGTATGCAGGTTTCACTGGGACAAATTGGTTCCACATTTTTTAGTTCACTATCAAGTAAAAGCTTTACAAGAGCAAACAATTGTCCATTTTCTGCAGCCTCCATTTTCCTGAACCTCCATT

Ace file of the UniGene sp_v2.0_unigene61784 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	glucan endo-1,3-beta-glucosidase 2 [Arabidopsis thaliana] sp\|Q9C7U5.2\|E132_ARATH RecName: Full=Glucan endo-1,3-beta-glucosidase 2; AltName: Full=(1->3)-beta-glucan endohydrolase 2; Short=(1->3)-beta-glucanase 2; AltName: Full=Beta-1,3-endoglucanase 2; Sho	-	-	2.0e-28	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	59%
Blast2go	glucan endo- -beta-glucosidase 2-like	-	-	4.71843e-36	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	anchored to plasma membrane	GO:0046658	Cellular Component	4.71843e-36	62%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 17	IPR000490	-	-
Sma3	X8	IPR012946	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZF3

Fln msg: your sequence is longer than subject: 567 - 212

Fln protein: MYPNPFLFRIFSPGKIVLYYKKFTPIMGTHHLNGQRVQQLLGLLLLFCAVICSGTSIGVSYDSKDSTLPSPKKLVELLMKHDLLHVRLLDANPIVLEALSGTGIEVAVSMKYKQTKDIGKSKSRAALWLKKNVMGFMPDTLITSIIVNHQGISEEAVSTLLSTMKAIYSALVDANLDKRIKVTTTLSSTLIQDASSVPPSSSTKDLRWVLHPLLAFVSKTGSFLILNTDFNRDFAHSEEDLINSVVVAARNAMAFLHYPDIPIVINDQGLLSETMKTFLMTKNLRDQVLAQSMNRARIWTIIVKMSSLDVSMQKELSREGEELFRSNSRELLDNKANSTRNKTTELGSQFDTFPTTPITTTPPTPITTTPTTPIGITPPATTITPTPTTPITTPTTPTVTPYAPPSTPTTTTPTTSSSQSWCVAKPGIPDSSLQVALDYACGLGGADCTAIQQSGTCYNPDTVFFHACYAFDSYYKKNGMAPGTCDFAGNAIVTTQDPSTGTCTFPQSSSSSSLLNTSIPTSGGLGGTSIPPTSGNNGDATSIFFCVPVFFALFSLIVSMMVGKQL*

Protein Length: 568

Fln nts: A_-_ATGTATCCCAACCCATTTTTATTTCGTATTTTTAGCCCAGGAAAAATTGTGCTATACTATAAAAAATTCACACCTATCATGGGGACACATCATTTGAATGGACAAAGGGTTCAGCAGCTCCTTGGTTTACTACTCCTATTTTGTGCTGTTATCTGTTCCGGAACATCAATTGGAGTGTCATATGATTCAAAGGACAGTACCCTGCCATCTCCTAAGAAGCTTGTAGAACTGCTGATGAAACATGATCTACTCCATGTTAGGCTCTTGGATGCCAATCCCATTGTTTTGGAAGCTTTATCTGGGACAGGGATTGAGGTGGCTGTGAGTATGAAGTATAAGCAAACGAAGGACATTGGAAAATCGAAGTCACGAGCAGCATTATGGCTGAAGAAAAACGTCATGGGTTTCATGCCTGATACCCTCATAACCAGTATCATTGTTAACCATCAAGGGATATCAGAAGAAGCAGTATCGACATTGCTATCTACTATGAAAGCCATTTATTCTGCTCTTGTGGATGCAAATCTAGATAAGCGTATCAAGGTCACAACCACACTTTCATCCACTTTGATTCAAGATGCATCTAGTGTGCCTCCATCCTCTTCCACCAAGGATTTGAGGTGGGTTCTTCACCCTCTGCTGGCGTTTGTCTCAAAGACAGGTTCTTTTCTGATACTGAACACTGACTTTAACAGAGATTTTGCACATAGTGAAGAAGACCTCATTAACTCTGTAGTCGTTGCTGCCAGAAATGCTATGGCATTTCTTCACTATCCTGATATTCCCATAGTTATTAATGATCAAGGTCTGCTTTCCGAAACAATGAAGACCTTTTTAATGACCAAAAATCTCAGGGATCAAGTTCTTGCCCAAAGCATGAATAGGGCTCGGATATGGACAATAATAGTGAAAATGAGTTCTTTGGACGTTTCTATGCAGAAGGAGTTGAGCAGAGAAGGGGAAGAACTGTTCCGCTCAAACTCTAGGGAGCTTTTGGACAATAAAGCTAACTCTACCAGGAACAAGACAACTGAGTTGGGATCTCAGTTTGATACTTTTCCAACTACACCTATTACAACAACTCCTCCAACTCCGATCACGACCACACCCACAACACCAATAGGAATAACTCCTCCTGCAACAACAATCACACCAACTCCTACTACCCCAATCACAACCCCTACCACCCCAACAGTTACCCCTTACGCCCCTCCCTCAACACCTACCACAACAACACCGACAACCAGCTCAAGCCAAAGTTGGTGTGTAGCAAAGCCTGGTATCCCTGATTCAAGCTTGCAGGTTGCTCTGGACTATGCTTGCGGGCTTGGAGGTGCAGACTGTACAGCAATTCAACAAAGTGGCACGTGCTATAACCCAGATACTGTTTTTTTTCATGCTTGCTATGCTTTTGACAGCTACTACAAGAAGAATGGCATGGCCCCTGGTACTTGTGACTTTGCTGGCAATGCAATTGTGACTACTCAAGATCCAAGTACTGGGACATGCACATTTCCACAAAGCAGTAGCAGTTCATCACTTCTTAATACAAGCATACCTACATCTGGTGGCTTGGGTGGTACTAGCATTCCACCAACATCGGGCAATAATGGTGATGCAACATCCATATTCTTCTGTGTTCCTGTTTTCTTTGCTTTGTTTTCTTTGATTGTATCTATGATGGTCGGAAAACAGCTTTAG___ATGATATCGATCTCTATTGGGTGAATCGAGGAGAAACATCAAGATGTTTTAGTTGGAATAGCTAGTGTAGACAGAGAGCTAGAGGATGTACAGGAAAAACTCTCAAGAGTTCGATCCCATTTGTCCCAACATTTTTTTTGATGCAATGGGGGGAACGCTAGGAGAGACTTTGAAAATGTGTACACCAGTGCAGTTCAGGTAATTCTTTCACTTTGTAGGAAAGAGAGGTTAAATATAGTTGGTATGCAGGTTTCACTGGGACAAATTGGTTCCACATTTTTTAGTTCACTATCAAGTAAAAGCTTTACAAGAGCAAACAATTGTCCATTTTCTGCAGCCTCCATTTTCCTGAACCTCCATT

Fln Alignment:

AllPineV4_rep_c71546___SSSQSWCVAKPGIPDSSLQVALDYACGLGGADCTAIQQSGTCYNPDTVFFHACYAFDSYYKKNGMAPGTCDFAGNAIVTTQDPSTGTCTFPQXXXXXSLLNTSIPTSGGLGGTSIPPTSGNNG
A9NZF3_______________SAGTTWCVAKNNVGDSTLQVALDYACGLGGADCTAIQQGGVCFDPDNVQAHASYAFNSYYVKNGMLPGTCDFAGSAAPTTNNPSFGKCMFETSTGSSSITSS---TGGSITGAMGPSTFNPNG

SNPs (tot: 54)

Position	A %	C %	G %	T %	Probability
1016			10	90	0.90298
1017		90	10		0.90298
1021	90		10		0.90298
1023		90	10		0.90298
1024		10		90	0.90298
1025	10	10	80		0.959698
1028	90		10		0.90298
1031	11	77	11		0.968132
1033	87		12		0.992554
1036			12	87	0.992554
1378		85	14		0.999981
1379	14			85	0.999981
1382			14	85	0.999981
1384	85	14			0.999981
1387		14		85	0.999981
1391	14			85	0.999981
1393			14	85	0.999981
1397		14	85		0.999981
1398			14	85	0.999981
1415	16			83	0.999991
1416		83	16		0.999991
1418			16	83	0.999991
1419	16			83	0.999991
1420		16	83		0.999991
1426	83	16			0.999991
1430	75		25		1.0
1431		61	15	23	1.0
1433	23	61		15	1.0
1439		23	76		1.0
1441	23	15	61		1.0
1445		27	72		1.0
1447	75	25			1.0
1452		75	25		1.0
1455		88		11	0.991528
1470			87	12	0.992554
1474	85			14	0.993533
1477		12	87		0.992554
1478	12		87		0.992554
1479	87		12		0.992554
1480		12		87	0.992554
1481		12	87		0.992554
1482	12		87		0.992554
1493			11	88	0.991528
1598	85		14		0.993533
1637	14		85		0.993533
1960	90	10			0.90298
1961		10	90		0.90298
1962		10	90		0.90298
1964			90	10	0.90298
2014	88	11			0.923564
2015	88	11			0.923564
2016		12		75	0.975346
2017	12			87	0.992555
2021			28	71	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain