SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene61741

Length: 469 nt

Origin of reads: Inia v1 Uma v2

UniGene Fasta

>sp_v2.0_unigene61741
AGTGAATATGTTGACATGGTACTTAACAAAGAATAGCTGCAGAATTACATGTCTTTCCTAGAAGTTGATTCTCAGATAGCCTTACATCCAGTGTTCATTAATCTATCTGTAATTGCTATTGCTTGCTATGCTATGTAGATTTCTGTATCTTACATGATAAAGATCAAAATAAGTTACTTAATGTAAATGCTCATAGTTATGTTATCTGAATATGACTTGTGAGAGCTACTGTATAACTATACATTTCCTTGTTTATATAAGAGAATACTTTCTGTTCAGGTTGCAAGTTGGGGTGGTGATTTGCTGGATCGTGGAATAATTACAGTGTCACTGGCGCCCAGAGATAATCATGAAGCGCAAGTGCAGTTTGCACTTGAACGGGGTATTCCTGCAATGCTGGGTATCATCTCTACACAGCGGCTTCCTTATCCATCCAATGCATTTGACATGGCTCACTGCTCTCGATGTC

Ace file of the UniGene sp_v2.0_unigene61741

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative methyltransferase PMT21 [Arabidopsis thaliana] ref\|NP_849408.1\| putative methyltransferase PMT21 [Arabidopsis thaliana] sp\|Q94II3.1\|PMTL_ARATH RecName: Full=Probable methyltransferase PMT21; AltName: Full=Protein EARLY-RESPONSIVE TO DEHYDRATION 3	-	-	2.0e-28	93%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%
Blast2go	methyltransferase pmt20	-	-	1.1643e-32	99%

Source	GOs	Term	Type	e value	Identity
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	1.1643e-32	99%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 10	IPR001000	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Putative S-adenosyl-L-methionine-dependent methyltransferase	IPR004159	-	-
Sma3	Cytokine-induced anti-apoptosis inhibitor 1	IPR007785	-	-
Sma3		IPR017909	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LMQ4

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 338 aas, your sequence is shorter than subject: 156 - 626

Fln protein: SEYVDMVLNKE*LQNYMSFLEVDSQIALHPVFINLSVIAIACYAM*ISVSYMIKIKISYLM*MLIVMLSEYDL*ELLYNYTFPCLYKRILSVQVASWGGDLLDRGIITVSLAPRDNHEAQVQFALERGIPAMLGIISTQRLPYPSNAFDMAHCSRC

Protein Length: 157

Fln nts: AGTGAATATGTTGACATGGTACTTAACAAAGAATAGCTGCAGAATTACATGTCTTTCCTAGAAGTTGATTCTCAGATAGCCTTACATCCAGTGTTCATTAATCTATCTGTAATTGCTATTGCTTGCTATGCTATGTAGATTTCTGTATCTTACATGATAAAGATCAAAATAAGTTACTTAATGTAAATGCTCATAGTTATGTTATCTGAATATGACTTGTGAGAGCTACTGTATAACTATACATTTCCTTGTTTATATAAGAGAATACTTTCTGTTCAGGTTGCAAGTTGGGGTGGTGATTTGCTGGATCGTGGAATAATTACAGTGTCACTGGCGCCCAGAGATAATCATGAAGCGCAAGTGCAGTTTGCACTTGAACGGGGTATTCCTGCAATGCTGGGTATCATCTCTACACAGCGGCTTCCTTATCCATCCAATGCATTTGACATGGCTCACTGCTCTCGATGTC

Fln Alignment:

AllPineV4_rep_c71360___VASWGGDLLDRGIITVSLAPRDNHEAQVQFALERGIPAMLGIISTQRLPYPSNAFDMAHCSRC
B8LMQ4_______________VASWGAYLLKRNILTMSFAPRDTHEAQVQFALERGVPAMIGIMASQRIPYPARAFDMAHCSRC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain