SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene61724

Length: 557 nt

Origin of reads: Biogeco1 v2 Uagpf v2

UniGene Fasta

>sp_v2.0_unigene61724
ATGGGCATTTTTGAGAAGCTGGCCGGCGAGGCTTCGAAGCTCGCCCGCTAGGCCAAGAAGCCGACCATTACCTCACGGGAGATCCAGACTGCTGTTAGGCTCGCTCTTCCAGGGGAGCTTGCCAAGCACGCTGTTTCCGAGGGTACCAAGGCGGTTACAAAGTTTACCAGCGCCTGAGTTTTGTGAGATCTAATTTTGAATTCAATGGTGTCTCTTGACACCACTTACGTCGTGGAACTTTTAACCAAGAGCAGGATTCATCCCAGAACAGGATCCGTCTATGGCTGTATGTTGCTAATTAGTAGTCTTGAAATTGGGATTCTTAAAACTAGGTCAAGTTAGCTATAATGCATAGGTCGTTGTTAAATCAAGTCATCCTTTTTCCATGTCTACATAGAATTCAACCTTTGGGCAGACTTCTTGGCTGTATCTGACATGGGGCTTCAGATTCCGCCTGGAAGAATGGCTTAATGGCAAAGTATTCATTGCTGGTTTATACCAGCTGTTTTAAGTTCTTATAGTTTCTGTTCTCAAAGTCATGATAAATGTTTCTTTTG

Ace file of the UniGene sp_v2.0_unigene61724

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histone H2B.10 n=5 Tax=Arabidopsis RepID=H2B10_ARATH	-	-	4.0e-19	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Blast2go	histone h2b like protein	-	-	3.76597e-25	94%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	3.76597e-25	94%
Blast2go	nucleolus	GO:0005730	Cellular Component	3.76597e-25	94%

Source	InterPros	Term	Type	Identity
Sma3	Histone H2B	IPR000558	-	-
Sma3	Histone core	IPR007125	-	-
Sma3	Histone-fold	IPR009072	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NU09

Fln msg: your sequence is shorter than subject: 59 - 142

Fln protein: MGIFEKLAGEASKLAR*AKKPTITSREIQTAVRLALPGELAKHAVSEGTKAVTKFTSA*

Protein Length: 60

Fln nts: ATGGGCATTTTTGAGAAGCTGGCCGGCGAGGCTTCGAAGCTCGCCCGCTAGGCCAAGAAGCCGACCATTACCTCACGGGAGATCCAGACTGCTGTTAGGCTCGCTCTTCCAGGGGAGCTTGCCAAGCACGCTGTTTCCGAGGGTACCAAGGCGGTTACAAAGTTTACCAGCGCCTGA___GTTTTGTGAGATCTAATTTTGAATTCAATGGTGTCTCTTGACACCACTTACGTCGTGGAACTTTTAACCAAGAGCAGGATTCATCCCAGAACAGGATCCGTCTATGGCTGTATGTTGCTAATTAGTAGTCTTGAAATTGGGATTCTTAAAACTAGGTCAAGTTAGCTATAATGCATAGGTCGTTGTTAAATCAAGTCATCCTTTTTCCATGTCTACATAGAATTCAACCTTTGGGCAGACTTCTTGGCTGTATCTGACATGGGGCTTCAGATTCCGCCTGGAAGAATGGCTTAATGGCAAAGTATTCATTGCTGGTTTATACCAGCTGTTTTAAGTTCTTATAGTTTCTGTTCTCAAAGTCATGATAAATGTTTCTTTTG

Fln Alignment:

AllPineV4_rep_c71301___IFEKLAGEASKLAR*AKKPTITSREIQTAVRLALPGELAKHAVSEGTKAVTKFTSA
A9NU09_______________IFEKLAGEASKLARYNKKPTITSREIQTAVRLALPGELAKHAVSEGTKAVTKFTSA

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
111		60	40		1.0
112	60			40	1.0
113		50	50		1.0
115			50	50	1.0
118		40	60		1.0
123		50	50		1.0
125	50			50	1.0
126	50		50		1.0
127			50	50	1.0
131			50	50	1.0
134	50		50		1.0
208	85	14			0.993535
209	85		14		0.993535
211		14	85		0.993535
215	14			85	0.993535
222	83		16		0.994512
225	83		16		0.994512
226		83		16	0.994512
232	16			83	0.994512
343	83		16		0.994512
365		16	83		0.994512
378			83	16	0.994512
472	25		75		0.996473
487	75		25		0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain