SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene61691

Length: 651 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene61691 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	vesicle transport v-SNARE 11-like [Solanum tuberosum]	-	-	2.0e-08	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Blast2go	vesicle transport v-snare protein	-	-	1.01991e-12	94%

Source	InterPros	Term	Type	e value	Identity
Sma3	Vesicle transport v-SNARE, N-terminal	IPR007705	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
289	16		83		0.994523
309	16		83		0.994512
354	20			80	0.995493
551		16	83		0.999991
552	83	16			0.999991
557	54	9		36	1.0
558	54	18	27		1.0
560	54		36		1.0
561		10		90	0.903076
562			44	55	1.0
568		37		62	1.0
571	66		33		1.0
574		33	66		1.0
577		66	33		1.0
579		33		66	1.0
580	66		33		1.0
583		66		16	0.988813
585	20	60		20	0.99255
587	80			20	0.995493
590	50		50		1.0
592	50	50			1.0
594			50	50	1.0
595	50	50			1.0
598	50			50	1.0
600		50	50		1.0
602		50	50		1.0
603	50	50			1.0
604		50		50	1.0
606	50	50			1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
66	81	TATTT TATTT TATTT T	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain