SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene61681

Length: 1746 nt

Origin of reads: Biogeco2 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene61681

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glucan endo-1,3-beta-glucosidase, putative n=1 Tax=Ricinus communis RepID=B9RYW1_RICCO	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	71%
Blast2go	glucan endo- -beta-glucosidase	-	-	71%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Glycoside hydrolase, family 17	IPR000490	-	-
Sma3	Ubiquitin-conjugating enzyme, E2	IPR000608	-	-
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Histone H2A	IPR002119	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	X8	IPR012946	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LR54

Fln msg: your sequence is shorter than subject: 418 - 435

Fln protein: MGVSLMGRGSLGMSCLWALVSLSGLALSNALSSTSATTTGINYGQVADDLPPPELVVGLLQTSNIGRIKLYTVNATVLKAFANTGIELIVGVPNEIIGNLTDPNSATEWVNENIQAYLPATKIIGIAVGNEVYTSDTQSMANLVPAMQNIHSALVSIGADTDIIISTPHSFGVLVTSYPPSAGSFQPGLESLMEQLLALLSQIGSPFFINAYPYFTYEDQPSQIPLDYVLLEPNASAVVDQNNNVVYKNMLYAQVDAVYSALSALGYPNLEVIVTETGWPSNGDADEAGATLQNAQAYNGNLFQLLAQNKGTPLRPNVVLQAYLFALFNEDLKPGPTSERNYGLFQPNGIAVYDVGLTGSLSIGNKKAVSVGSPTGSADTPYYSISFAKETCTDISFYNHLQVLALSSFLVLQLFLP*

Protein Length: 419

Fln nts: CTTGCCCAGCTTTaACCCTTTCAGTTGCTGTCCAGTGGAGGACACATTTATCACTAACGCTGTGCAATATTGAGTACCTGCAAAGAGCATATGTGCTATCACAGCACCAGCAAGACCCACTCGATTAATTTCTCGCAATTTTCTGCATGCGAGAAAATTTGGGCACGTAGAGGGTGCTGCC_-_ATGGGAGTTTCACTAATGGGCAGAGGAAGTCTAGGAATGAGCTGCTTGTGGGCTCTGGTTTCGCTGTCTGGACTGGCTCTTTCAAATGCTCTGTCCAGCACAAGTGCCACCACAACAGGAATCAACTATGGACAAGTTGCAGACGACTTGCCACCTCCGGAACTAGTAGTGGGTCTTTTGCAGACCAGCAATATCGGCAGAATAAAACTCTACACTGTAAATGCGACAGTCCTGAAAGCATTTGCAAACACTGGTATAGAATTGATTGTTGGAGTGCCAAATGAAATCATTGGCAACTTGACAGATCCAAACTCAGCCACTGAATGGGTCAATGAAAACATTCAAGCTTACTTACCAGCCACAAAGATCATAGGTATAGCAGTAGGGAACGAGGTTTACACAAGTGACACACAGTCAATGGCAAACCTAGTTCCTGCAATGCAAAACATTCATTCGGCCCTAGTCAGCATTGGTGCGGACACGGATATTATAATTAGCACTCCCCATTCTTTTGGTGTACTTGTGACTTCATATCCACCATCTGCTGGTTCATTTCAACCAGGACTGGAGAGCCTAATGGAACAGCTTTTGGCTCTCCTGTCTCAGATTGGTTCTCCTTTCTTCATAAATGCTTATCCATACTTTACATACGAAGATCAGCCAAGCCAGATACCCCTGGATTATGTACTACTCGAACCAAATGCAAGTGCTGTCGTTGACCAGAACAATAATGTTGTCTATAAGAACATGTTATATGCACAGGTTGATGCAGTTTATTCTGCACTATCTGCACTAGGATATCCTAATCTAGAAGTCATAGTCACTGAAACTGGATGGCCTTCAAACGGTGATGCCGATGAAGCAGGTGCAACTCTTCAGAATGCACAGGCTTATAATGGGAATTTGTTTCAGCTGCTGGCTCAGAACAAGGGGACTCCTTTGAGGCCCAATGTTGTTTTGCAGGCTTACCTATTTGCATTATTCAATGAAGACTTGAAGCCTGGCCCAACCTCCGAGAGGAATTATGGGCTATTTCAGCCAAATGGAATTGcAGTTTACGATGTGGGATTAACTGGATCACTGTCTATTGGTAATAAAAAGGCCGTGTCAGTTGGTTCTCCCACTGGTTCCGCTGATACTCCATACTACAGTATTTCTTTTGCCAAGGAAACTTGTACTGATATCTCCTTCTACAATCATCTCCAGGTTTTGGCCCTCTCTTCTTTCTTGGTTCTTCAACTGTTTCTTCCATGA___TTGAAATTTGAAACCATGGAAGTCCTGTAGAAATTTGCATGTTCCTTTCATTTCATTCAACATCAGCTAAAACGACGAAACTCAGAGGAAATTTTGTGGTGGATAACTAAATATATTCACTGCAGACAGTGAAGGAGCAAGCATCTGCCTTTACATCACATGCTGATAACTTGAGCATCCTCATTTATTAACGAGGAGCTGTTGTCAGACACATATCAGTGAGTCCCATAATTGCAATAATGCAGACATCAGCATGGCCCTGGCTTTACATTACGGATTTTATTTGACCTTTTTATATATCGAGTTTAAAC

Fln Alignment:

AllPineV4_rep_c71017___MGVSLMGRGSLGMSCXXXXXXXXXXXXXXXXXXXXXXXXGINYGQVADDLPPPELVVGLLQTSNIGRIKLYTVNATVLKAFANTGIELIVGVPNEIIGNLTDPNSATEWVNENIQAYLPATKIIGIAVGNEVYT-SDTQSMANLVPAMQNIHSALVSIGADTDIIISTPHSFGVLVTSYPPSAGSFQPGXXXXXXXXXXXXXXIGSPFFINAYPYFTYEDQPSQIPLDYVLLEPNASAVVDQNNNVVYKNMLYAQVDAVYSALSALGYPNLEVIVTETGWPSNGDADEAGATLQNAQAYNGNLFQLLAQNKGTPLRPNVVLQAYLFALFNEDLKPGPTSERNYGLFQPNGIAVYDVGLTGSLSIGNKK-------AVSVGS-----------PTGSADTPYYSISFAKETCTDISFYNHLQVLALSSFLVLQLFLP
B8LR54_______________MGTSVMGRGGLKMSCLWVLVLLSGLALSNAQSKISSSTTGINYGQVADNLASPELVVGLLQTNSINKVKLYSVNETVLKAFANTGIELIVGMGNEDVGNMTDPTKATEWVNENIKAYLPATKIRGIAVGNEVYTGTDTQLMANLVPAMKNIHSALVSIGADTNIKITTPHSLAVLGNSFPPSAGSFASDLKSLMKPLLDLLSQIGSPFFINAYPYFAYKGDPSQISLNYVLFEPN-SGVVDPNNNIRYNNMLYAQVDAVYSALSALGYTNIEVTVSETGWPSKGDANEAGATLQNAQSYNGNLLQLLAQNQGTPLRPKLVLQAYLFALFNEDMKPGPASERNYGLFKPDGTAVYNLGLTGTLSTGSSSTGSSSTGSTSTGSFSTGSPPPAIYPNSPTDSSYSYYSSAKETCSVISFYNHLQLLCLSTFLVVLLFLP

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1240	33	66			1.0
1289	33		66		0.999989
1315		33	66		0.999999
1426	66			33	0.997452
1470		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain