SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene61634

Length: 1377 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene61634 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Proteasome subunit beta type n=2 Tax=Picea sitchensis RepID=A9NYS4_PICSI	-	-	97%
FL-Next	sp=Proteasome subunit beta type; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	proteasome subunit beta type-5-a	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	88%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	88%
Blast2go	proteasome complex	GO:0000502	Cellular Component	88%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase T1A, proteasome beta-subunit	IPR000243	-	-
Sma3	Proteasome, subunit alpha/beta	IPR001353	-	-
Sma3	Proteasome, beta-type subunit, conserved site	IPR016050	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NYS4

Fln msg:

Fln protein: MKLDLSGLEPATLHQQSDDNLYDVLSPSPSFKIPNDTDFDGFQKAALQMVKPAKGTTTLAFIFKEGIMVAADSRASMGGYISSQSVKKIIEINPYLLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYRWDMPVEEAAELARRSIYHATFRDGASGGVASVYYVGPQGWKKLSGDDVGELHFKYYPVTENIVEQEMVEVSA*

Protein Length: 273

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATAACGTCATGACCTTGGCTGTCAGAAAGGAACGAGGGTTTAATTTTACAGTTTTGAAGTCGTTGTCTGAGCTTGATCGTGTTGGATTTCTGTAACTGTGAAGGGGGGATACCAGCAATCGCAGTGTTCAAAGCGAGGAAACATCAGGTTGCAAG_-_ATGAAGCTTGACTTGAGTGGCCTTGAGCCTGCAACCCTCCATCAACAGTCAGATGATAACCTCTATGATGTCTTATCTCCAAGTCCATCATTCAAGATTCCTAATGATACAGATTTTGATGGCTTCCAAAAGGCAGCATTGCAAATGGTGAAACCAGCAAAGGGAACAACAACTCTTGCATTTATATTCAAGGAGGGAATTATGGTTGCTGCCGATTCTCGTGCCAGCATGGGAGGATACATTTCATCACAATCTGTGAAGAAAATTATTGAAATCAATCCTTACTTACTTGGTACAATGGCTGGGGGTGCAGCTGATTGCCAATTCTGGCACAGAAACCTGGGCATTAAGTGTCGGTTGCACGAGCTGGCAAACAAGCGGAGAATATCAGTGACAGGTGCATCTAAATTGTTGGCTAATATCCTGTACTCATACCGAGGAATGGGCCTGTCAGTAGGCACAATGATTGCTGGATGGGATGAAACGGGCCCTGGTCTATATTATGTAGACAGTGAAGGAGGAAGACTTAAGGGAACACGTTTTTCTGTTGGATCTGGTTCACCATATGCCTATGGTGTCCTGGACAGCGGGTATCGCTGGGATATGCCAGTGGAAGAAGCTGCAGAACTAGCTCGCCGTTCTATATACCATGCAACATTTCGTGATGGTGCCAGTGGGGGTGTGGCAAGTGTGTACTATGTGGGTCCTCAAGGTTGGAAGAAGTTGTCTGGTGATGATGTTGGTGAACTTCATTTCAAATACTATCCAGTCACAGAAAATATTGTAGAGCAGGAGATGGTTGAAGTCAGTGCTTGA___AAGCCTCAATTGATGCACCATGTATCTTGAGGTTGCTGGCTTTACAAGCTGATGGTCATTTTGTATGCAAGTTTTCCTTTTCTAGTGCTATTATCCATTTGGCAAAGGGGATATCTTGATTATTAACTTCCTCCATTCTTATTTGAGGGAGGTTTCTGGTTGAAACAATCAATATTTGCAATCACAAATTTTTTTAATTACTAGTTAAGCCAAGTAAAGATGCTTAAACATGCATCGATTCATTGTGTTTAGCAATACCATTGTATTAGCAACGGATTAATGCAGTTACTTTTGGTTGACACATGTTGGTATATTTGACTTGTGAAATGGTCTCATTAATATTTATAATTGGATTAATAAATCTCTGGAAATTTTGGGCTTC

Fln Alignment:

AllPineV4_rep_c70553___MKLDLSGLEPATLHQQSDDNLYDVLSPSPSFKIPNDTDFDGFQKAALQMVKPAKGTTTLAFIFKEGIMVAADSRASMGGYISSQSVKKIIEINPYLLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYRWDMPVEEAAELARRSIYHATFRDGASGGVASVYYVGPQGWKKLSGDDVGELHFKYYPVTENIVEQEMVEVSA
A9NYS4_______________MKLDLSGLEPATLHQRSDDNLCDVFSPSPSFKIPNDTDFDGFQKAALQMVKPAKGTTTLAFIFKEGIMVAADSRASMGGYISSQSVKKIIEINPHLLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSIGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYRWDMPVEEAAELARRSIYHATFRDGASGGVASVYYVGPQGWKKLSGDDVGELHFKYYPVTENVVEQEMVEVSA

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
795		90		10	0.90298
822		11		88	0.991528
931	20			80	0.995493
937	20			80	0.995493
940	80			20	0.995493
947			33	66	0.997452
948	25	75			0.996473
949			25	75	0.996473
951		75	25		0.996473
959	25			75	0.996473
960			25	75	0.996473
963		25	75		0.996473
965		25		75	0.996473
968	75	25			0.996473
969	75		25		0.996473
972			25	75	0.996473
974	25			75	0.996473
975	25	75			0.996473
1034	87	12			0.992554
1222	5		94		0.998894
1319		18		81	0.999994
1321	66		33		1.0
1323	66		33		1.0
1325			37	62	1.0
1327	66	33			1.0
1329		66	33		1.0
1332	37			62	1.0
1333	37	62			1.0
1335			37	62	1.0
1337		87	12		0.992554
1340	44			55	1.0
1341			11	55	1.0
1342		87		12	0.992554
1343		22		44	1.0
1346		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain