SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene61536

Length: 526 nt

Origin of reads: Biogeco1 v2 Uagpf v2

UniGene Fasta

>sp_v2.0_unigene61536
CGTCGTGACCTTGGCTGTCACTCAGCTCTATGCTGGGGACTTGAATTTGGCGAAAGGGAAATTTTGTGTTATCTTGGCTGTCGGTCATTTCAGAGTTTGTGGAGAAGGGCGAATATAAAGAGTCGAGTTTTTATTTCCAACAAAGAAAATCCAGCACTTCGAGGAGGGATCAGGATGAAGGTGAAAGTTCTCCGTATCCTTTGAATGAAAAAATATGGACGGGTTCTTGTTATGACCAAATACTAAAAAAGCCATCATTTGCACGTACTTTCTCAACTATCAGAAAAATTTGTACTACTTTCTTAACTCATCAACTCCTGGAAATAATCAGAGTGGCATGCTGTAGCTTCATGGACATGGGATGCAAAAGATGAGTTATGTGCAATCTGTAAATTGCCTTTTGATGGTTGCTGTACTGAATGCAAATATCCTGGTGATGACTGTCCATTGGTGTGGGGTGCATGTTCTCACCCTTTCCATCTTCACTGCATAGTTAAATGGACTGGCACACAAAATCGGGCTTCGC

Ace file of the UniGene sp_v2.0_unigene61536

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Anaphase-promoting complex subunit 11 n=4 Tax=rosids RepID=F4J9K5_ARATH	-	-	1.0e-26	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	98%
Blast2go	anaphase-promoting complex subunit 11	-	-	0.0	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	0.0	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQM0

Fln msg: STOP codon was not found. Distance to subject end: 15 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 66 - 86

Fln protein: SEWHAVASWTWDAKDELCAICKLPFDGCCTECKYPGDDCPLVWGACSHPFHLHCIVKWTGTQNRAS

Protein Length: 67

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCTCTATGCTGGGGACTTGAATTTGGCGAAAGGGAAATTTTGTGTTATCTTGGCTGTCGGTCATTTCAGAGTTTGTGGAGAAGGGCGAATATAAAGAGTCGAGTTTTTATTTCCAACAAAGAAAATCCAGCACTTCGAGGAGGGATCAGGATGAAGGTGAAAGTTCTCCGTATCCTTTGAATGAAAAAATATGGACGGGTTCTTGTTATGACCAAATACTAAAAAAGCCATCATTTGCACGTACTTTCTCAACTATCAGAAAAATTTGTACTACTTTCTTAACTCATCAACTCCTGGAAATAATCAGAGTGGCATGCTGTAGCTTCATGGACATGGGATGCAAAAGATGAGTTATGTGCAATCTGTAAATTGCCTTTTGATGGTTGCTGTACTGAATGCAAATATCCTGGTGATGACTGTCCATTGGTGTGGGGTGCATGTTCTCACCCTTTCCATCTTCACTGCATAGTTAAATGGACTGGCACACAAAATCGGGCTTCGC

Fln Alignment:

AllPineV4_rep_c70309___EWHAVASWTWDAKDELCAICKLPFDGCCTECKYPGDDCPLVWGACSHPFHLHCIVKWTGTQNRA
A9NQM0_______________QWHAVASWTWDAKDELCAICKLPFDGCCTECKYPGDDCPLVWGACSHPFHLHCIVKWTGTQNRA

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
156		66	33		0.997457
157	66			33	0.997457
162		33		66	0.997457
336	14		85		0.993533
441		33		66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain