SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene61529

Length: 542 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene61529
GCACGAGCAAATGCTCGTAACCAGACTAAGGAGCAGATTAGGATATGAATCAGCTCTGTGAACGATTGCCAAGCCCTAATGGAGAATCAGTTGTTGATTGCGATCAAATATCAAGCATGCCAACTGTTTCGTCGTCGACCTTGGAAATGTAACATTCAGTCTCACACCAGATCAGTATATTCTTAAAGTTGGTGAAGGTTCCGTCGTGACCTTGGCTGTCAAGTGGTTTTATGGGTTTGGATGTCCCTCCACCGTTGGGTCCTATATGGATTCTTGGAGATATTTTCATGGGCGTCTACCACACAGTGTTTGATTATGGAAACTTGAGAGTGGGATTTGCTGAAGCTGTTTGAAGATGGACATATAATGTTATATGGCGCGACAGTGCAATATTTTTATTACTCTCTCGTGTGCAGTGTAGATGGAACCACGCATTTTACTTCAAGAATGCTTTATTTCGGTGCCCTTGTTGATACATATTCTCTTGTATAGCGAAGCTTAGTCTCTATAGATACTATTGAAATATTTTTAAGTACAGGAAA

Ace file of the UniGene sp_v2.0_unigene61529

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Predicted protein n=2 Tax=Physcomitrella patens RepID=A9SM45_PHYPA	-	-	2.0e-26	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Blast2go	aspartic proteinase	-	-	2.13898e-37	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuole	GO:0005773	Cellular Component	2.13898e-37	73%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase A1	IPR001461	-	-
Sma3	Actinin-type, actin-binding, conserved site	IPR001589	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Saposin-like type B, 1	IPR007856	-	-
Sma3	Saposin-like type B, 2	IPR008138	-	-
Sma3	Saposin B	IPR008139	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3	Saposin-like	IPR011001	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P1V4

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 117 - 284

Fln protein: TSKCS*PD*GAD*DMNQLCERLPSPNGESVVDCDQISSMPTVSFSTLEL*HSVSHQISIFLKLVKVPS*PWLSSGFMGLDVPPPLGPIWILGDIFMGVYHTVFDYGNLRVGFAEAV*

Protein Length: 118

Fln nts: GCACGAGCAAATGCTCGTAACCAGACTAAGGAGCAGATTAGGATATGAATCAGCTCTGTGAACGATTGCCAAGCCCTAATGGAGAATCAGTTGTTGATTGCGATCAAATATCAAGCATGCCAACTGTTTCgTttTCGACCTTGGAAcTataACATTCAGTCTCACACCAGATCAGTATATTCTTAAAGTTGGTGAAGGTTCCGTCGTGACCTTGGCTGTCAAGTGGTTTTATGGGTTTGGATGTCCCTCCACCGTTGGGTCCTATATGGATTCTTGGAGATATTTTCATGGGCGTCTACCACACAGTGTTTGATTATGGAAACTTGAGAGTGGGATTTGCTGAAGCTGTTTGA___AGATGGACATATAATGTTATATGGCGCGACAGTGCAATATTTTTATTACTCTCTCGTGTGCAGTGTAGATGGAACCACGCATTTTACTTCAAGAATGCTTTATTTCGGTGCCCTTGTTGATACATATTCTCTTGTATAGCGAAGCTTAGTCTCTATAGATACTATTGAAATATTTTTAAGTACAGGAAA

Fln Alignment:

AllPineV4_rep_c70264___MNQLCERLPSPNGESVVDCDQISSMPTVSFSTLEL*HSVSHQISIFLKLVKVPS*PWLSSGFMGLDVPPPLGPIWILGDIFMGVYHTVFDYGNLRVGFAEAV
A9P1V4_______________LNQLCDRLPSPNGESVVDCDQVSSMPTVSFSIGNKTFSLTPDQ--YILQVGEGSVAQCVSGFMGLDVSPPLGPIWILGDIFMGVYHTVFDYGNSRVGFAEAV

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
131	33		66		0.997452
133		66		33	0.997452
134			66	33	0.997452
147	33	66			0.997452
149	33		66		0.997452
150	33			66	0.997452
151	33	66			0.997452
156		33		33	0.997753
157	25	75			0.996473
203		50		50	1.0
206	40	50	10		1.0
208		50		50	1.0
211	40			10	1.0
213	50	50			1.0
214		10	50	40	1.0
216		10	90		0.90298
217	10		40		1.0
218		40	10		1.0
223	80	10			0.959698
225	70			20	0.999998
226	10	20	70		0.999998
227	10			90	0.90298
232		10		90	0.90298
233	10			90	0.90298
249	12	87			0.999964

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain