SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene61432

Length: 684 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene61432 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: similar to RPL18AA (60S RIBOSOMAL PROTEIN L18A-1); structural constituent of ribosome isoform 2 n=1 Tax=Vitis vinifera RepID=UPI000198595A	-	-	89%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	60s ribosomal protein l18a	-	-	94%

Source	GOs	Term	Type	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	94%
Blast2go	plasma membrane	GO:0005886	Cellular Component	94%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	94%
Blast2go	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	94%

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR002670	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 44)

Position	A %	C %	G %	T %	Probability
391		21		78	1.0
486	18		9	63	0.999997
490		75	8		0.99999
492	90		10		0.90298
493	9		18	72	0.999994
494		27		72	1.0
495	80	20			0.999996
496	20	70	10		0.999998
497	18	9		72	0.999994
498		81	18		0.999994
499	9		18	72	0.999994
500	10			90	0.90298
502	18		9	72	0.999994
503		18		81	0.999994
504		81	18		0.999994
507			18	72	0.999994
508			11	88	0.923695
509	11			88	0.923695
511			11	88	0.923646
531		85		14	0.993533
532		85	14		0.993533
533	14			28	1.0
534	71			28	1.0
536	57	28		14	1.0
538	85		14		0.993533
539	85		14		0.993533
540	28	71			1.0
541			28	14	1.0
542	42			57	1.0
543			14	85	0.993533
546	28	14	57		1.0
547	85	14			0.993533
549	50		12	37	1.0
550	25		12	62	1.0
552	12	12	37	37	1.0
555	14			28	1.0
556	14	14	14	57	0.979185
558	12	25	62		1.0
559	12	37		37	1.0
561		60	20	20	0.992578
562			50	50	1.0
567			33	66	0.997467
568	33			66	0.997467
569		33		66	0.997467

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain