SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene61346

Length: 1235 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene61346 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Proteasome subunit beta type n=1 Tax=Picea sitchensis RepID=A9NYV8_PICSI	-	-	95%
FL-Next	sp=Proteasome subunit beta type; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	20s proteasome beta subunit pbb2	-	-	93%

Source	GOs	Term	Type	e value	Identity
Blast2go	peptidase activity	GO:0008233	Molecular Function	0.0	93%
Blast2go	proteasome complex	GO:0000502	Cellular Component	0.0	93%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase T1A, proteasome beta-subunit	IPR000243	-	-
Sma3	Proteasome, subunit alpha/beta	IPR001353	-	-
Sma3	Proteasome, beta-type subunit, conserved site	IPR016050	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NYV8

Fln msg: Overlapping hits, possible frame ERROR between 898 and 892,

Fln protein: MANTTIELPPKGGFSFDLCRRNEMLAKKGVQPPSFRKTGTTIVGLVFKDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLELHRYATGRESRVVTALTLLKSHLYSYQGHVSAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESRYKEGMTREEGIKLVCEAICSGIFNDLGRSNNDVCVxxxxQSEYLRNYALPNPRTYVSSKGYSFAKGHTEVLSTKIIPLKEHVQIIEGDAMEE*

Protein Length: 274

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGCAGAGCTTTCTAAACGTCGTGACCTTGGCTGTCACTCAAATTTTCAGCTCGCCACCGAGAAAAGCCGAAAACACAAATACCAAGTGACGGACTCCTCTTCCCTTTGCCGCGATTTAGGGTTTGGAAGGTCTCAAACTTCGACGGAATTTCACTGATTTCGGGAGTTTGCGGGGTAATATTCTGCGTTTTACAGGGTTTCTGTTCCCATCCGCGAAGCC_-_ATGGCAAATACTACGATCGAACTCCCCCCTAAAGGCGGCTTCAGCTTTGATTTGTGTCGGAGAAATGAAATGCTTGCGAAGAAAGGTGTTCAGCCTCCTTCGTTCCGCAAGACAGGAACAACCATTGTAGGCCTCGTTTTCAAGGACGGAGTCATTCTTGGAGCAGACACTCGTGCAACAGAAGGTCCAATTGTATGTGATAAGAACTGTGAAAAAATACATTATATGGCACCAAACATATACTGCTGTGGAGCTGGAACTGCTGCTGATACAGAAGCAGTGACAGATATGGTTAGCTCCCAACTAGAATTGCACCGCTATGCAACTGGTCGAGAATCGAGGGTTGTCACTGCTCTTACCCTTCTCAAATCTCATCTTTACAGTTACCAAGGCCATGTGAGTGCAGCCCTGGTACTTGGTGGTGTGGATTGTACAGGACCACATTTGCATACAATTTATCCCCATGGATCAACTGACACTTTACCTTTTGCTACAATGGGTTCCGGTTCTCTTGCTGCTATGGCTATGTTTGAATCAAGATACAAAGAAGGCATGACAAGAGAGGAGGGAATAAAGCTGGTTTGTGAAGCTATCTGTTCTGGAATCTTCAATGATCTGGGAAGAAGTAATAATGACGTATGTGTGxxxxxxxxxxxxCAAAGCGAATATTTGCGGAATTATGCGCTTCCAAATCCACGTACCTATGTTAGTTCAAAAGGTTATTCATTTGCCAAGGGACATACAGAGGTTCTTTCAACGAAAATAATCCCTTTGAAAGAGCATGTGCAAATTATTGAAGGGGATGCTATGGAAGAGTGA___GTAATGCAGATGATAAATTCTGGTATTTCTTGGGATAGTTATTTCTCCTATAAATGAATCCTTCACAGTCACTGAACATAATTTGGAAACCATTCCATTCAATTAACGAATCGGGACTCGATCCCTGAGATGGATTTTTGCGAAAGGAACATCACACAGATATCCAACATATT

Fln Alignment:

AllPineV4_rep_c68889___MANTTIELPPKGGFSFDLCRRNEMLAKKGVQPPSFRKTGTTIVGLVFKDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLELHRYATGRESRVVTALTLLKSHLYSYQGHVSAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESRYKEGMTREEGIKLVCEAICSGIFNDLGR-SNNDVCVIxxGQSEYLRNYALPNPRTYVSSKGYSFAKGHTEVLSTKIIPLKEHVQIIEGDAMEE
A9NYV8_______________MANTAIELPPKGGFSFDLCRRNEMLAKKGVQSPSFRKTGTTIVGLVFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLELHRYATGRESRVVTALTLLKSHLYSYQGHVSAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESRYREGMTREEGIKLVCQAICSGIFNDLGSGSNVDVCVIxxGQKEYLRNYELPNPRTYVSSKGYSFAKGHTEVLSTKITPLKEHVKIIEGDAMEE

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
589	25	75			0.996473
697	88		11		0.923564
859		90		10	0.90298
864	10	90			0.90298
866	10			90	0.90298
867	90		10		0.90298
869	90	10			0.90298
871	10			90	0.90298
960	10	90			0.90298
961		90	10		0.90298
962			10	90	0.90298
964		10		90	0.90298
966		10	90		0.90298
968	10		90		0.90298
969		10	90		0.90298
971			88	11	0.92357
1037	26			73	1.0
1175	71			28	1.0
1180		30	69		1.0
1183	33			66	1.0
1189	20		80		0.999996
1194			81	18	0.999994
1195			81	18	0.999994
1200			81	18	0.999994
1201	90			10	0.90298
1203		10	90		0.903503

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain