SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene61324

Length: 2411 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene61324
ATGGGGGCCTGAGAAAGAGAATTGCGTTTTGCTTGCTACGTGTCCCAATATTAAGGCGTCGTGACCTTGGCTGTCACTCAACTACCTTTCCTTGTCGGTTGAGCGTGTCCACTCTTCTATGGCTGAATTCACTGGGGGTATTATCGTACTCCAATCTGATTGAGCCTCAGCAGGATCCTTATAAACACCAAATGTGGTATTCTCAGTAGGGGAAGGAGGCCACTTGCAAAAGAATTTGTGTGAGCGTAATTTGGAGAAGAGAAAATTTCAGAAGAATTGGATTATGGCACAGTTTCAAGATGAGAGGACATCGGAACCTCTGAAACTCCAGCAAGGTGAACGTGAGGAGTCGCAGCAGCAGCAGGATGCATGGCCAAAGCCATCGACGCCTGTGTCGCGAACAAAGGAAACACAGGTAGCCGATGAGGAAGAAAATGCCGTTTCTCAGTCCCCTAAGAAATCGATGCTGCGGAGGGTGAAAGACAGAGCCAAGACATATATCCATAAGCACGGTTATGGCCACAGTAAAGAGCAAGGAGAAGAGGAAGACCACGATCAGCTTGAAGAAGAGGGCCACGATCACTTTAAAGAAGACCAAAAAGAAAATACGGAAGGGGAGAAGAAAGAAAAAGCAGAGGATTTGAATTCTAATTTCAGTAGCAGATCTTCAGATGCAGGTTCGGCCGTGTCTCCGGCGTTAGATGCATCTTCAGCACCTGTAGAGACGAGAGGACAGCAAGAAGTGCCTACGACTCCAGCTGTAGTTAATAGGCGAAATGAAGCTCTAGAAAATGAATATTATGGCAAAGATAAGGCAGAGAAGAGCGACTACAGCGATGCCTTCCCTAGAGCTCCTAAGGATCCGGAGGGAATGATGAAGTCCATAAATGAAGAATCGGCGGTGGAAACAGTACAAAATCAAGAAGCTGCCAAAGATCGTTGGTACGATGCCGATGACACCGTCGCTGGAGCGCCTACTGTGAAAGATCAAAATCCGAGCCTGAGCCATCCAGGTTCAGAGAAATGTGGAACAACGGAGCCGATATTCGACGAGCTTGAAGATGCAGATCAGGATAAGCTTGGCGACAAAGAGAATAAAGTTCCTGCAGGTCTTTCAGATGAATCGCAGGCTTCAAAAGCCCTGCAAGAGGCTAGCAGCGAAGAGTTTAATGAAAATGCTGGTCGATCAACAGCTTTGGAGGATACCACTTATATTGAGGGATCGAAGGATACAACTGCAATGAATTTGGGAGTTACAGGCCTGGATGCCAGTGAAAAGGATAAAGAAACGAAGGATGAAGAATGGGACGGGGATGACGAAAGTTACAAGGAGAAGATTCATGATAAGACATCAACAGAATATGGCACCAATGTTGCATCAAAACGTGGAAATGACGAACAACAATCTATCCACGAGCCGCCCTATGAGCCAGATAGAATGGCAGAGAAAGAAAATTATGAGAATAGCGAAGAAGGTAAAAGTTATGGAGACCAGATCTATAACAAAGATCCCACAGAAAAGATTGAACCTTCATCCAAATTCGGACATGGCGAACATCAAGAACCTGGGCAAGAGGAGACCGAGAGGAGAACAGAGGAGGGTTAGTACAGATGATGTAGAAGAGGCGAATGAAGAAACTGGCAAAAGTTCGACAGGCACACCTTCTGCAGCCGAGAGCATAGTTTCGTCCAATCCTGCGGTGGAAGAGAAAGTTGAAGGGCAAGCAATGGGAATCGATGAAGATGATGTTTATAAGAAAACAAAATCAGATGACAAGAGCTTGACAGAGACACCTTCTGTAGACAAGGGTGGAGTTTCATCCAATCCTGTTGTAGAAGAGAAAGCTGATGGGCAAACGGGCGAAACGTATGAAGATGATGTTGAGGAGAAAACAAAATCTGATGGGCATGATACTGTTGCAGGAAAAAGTTACTCGGAGCAGGTGTATTCCACAGCCAGCACTGCAAAAGGTGCCCTTTACTCAGTGTTTGGATATGGAGGAGCAAAAGCTGTGCCGGATAAGCAGATTCAACCAACTGAGAGTAAGGAATGAGTGAATCTAATGCTCAGATTCTACAGGGGACTACACTTCTGATAATATTAATTTGATCGAATGAATTTTAATTTCTTGTTTCTTCCTGGGTCAATGTGGATTGGAGCGTTTTCTGTTGAAGCACACCATTCAAATAAGCAGTCCGATGCCGCCTATCATCTGAGAATCATAGAAGATCATGCAAATAGTCTGGATTGTCGTGATATTTTAATATTTTGTAGAAGACCATGCAAGTGTTGTGGATTACTGTCGTGATAATATTTGTAAACTCAAAATGTGTGTAATGATACGATATATTTATCTCTATTGTAAGTGACATATTTGTTGTAATATTGATTATTTTTTACAATAAACATT

Ace file of the UniGene sp_v2.0_unigene61324 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	UPI00016E69C4 related cluster n=1 Tax=Takifugu rubripes RepID=UPI00016E69C4	-	-	8.0e-05	19%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%
Blast2go	unknown [Picea sitchensis]	-	-	1.37119e-30	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8N7

Fln msg: your sequence is longer than subject: 263 - 96

Fln protein: MPVKRIKKRRMKNGTGMTKVTRRRFMIRHQQNMAPMLHQNVEMTNNNLSTSRPMSQIEWQRKKIMRIAKKVKVMETRSITKIPQKRLNLHPNSDMANIKNLGKRRPRGEQRRVSTDDVEEANEETGKSSTGTPSAAESIVSSNPAVEEKVEGQAMGIDEDDVYKKTKSDDKSLTETPSVDKGGVSSNPVVEEKADGQTGETYEDDVEEKTKSDGHDTVAGKSYSEQVYSTASTAKGALYSVFGYGGAKAVPDKQIQPTESKE*

Protein Length: 264

Fln nts: ATGGGGGCCTGAGAAAGAGAATTGCGTTTTGCTTGCTACGTGTCCCAATATTAAGGCGTCGTGACCTTGGCTGTCACTCAACTACCTTTCCTTGTCGGTTGAGCGTGTCCACTCTTCTATGGCTGAATTCACTGGGGGTATTATCGTACTCCAATCTGATTGAGCCTCAGCAGGATCCTTATAAACACCAAATGTGGTATTCTCAGTAGGGGAAGGAGGCCACTTGCAAAAGAATTTGTGTGAGCGTAATTTGGAGAAGAGAAAATTTCAGAAGAATTGGATTATGGCACAGTTTCAAGATGAGAGGACATCGGAACCTCTGAAACTCCAGCAAGGTGAACGTGAGGAGTCGCAGCAGCAGCAGGATGCATGGCCAAAGCCATCGACGCCTGTGTCGCGAACAAAGGAAACACAGGTAGCCGATGAGGAAGAAAATGCCGTTTCTCAGTCCCCTAAGAAATCGATGCTGCGGAGGGTGAAAGACAGAGCCAAGACATATATCCATAAGCACGGTTATGGCCACAGTAAAGAGCAAGGAGAAGAGGAAGACCACGATCAGCTTGAAGAAGAGGGCCACGATCACTTTAAAGAAGACCAAAAAGAAAATACGGAAGGGGAGAAGAAAGAAAAAGCAGAGGATTTGAATTCTAATTTCAGTAGCAGATCTTCAGATGCAGGTTCGGCCGTGTCTCCGGCGTTAGATGCATCTTCAGCACCTGTAGAGACGAGAGGACAGCAAGAAGTGCCTACGACTCCAGCTGTAGTTAATAGGCGAAATGAAGCTCTAGAAAATGAATATTATGGCAAAGATAAGGCAGAGAAGAGCGACTACAGCGATGCCTTCCCTAGAGCTCCTAAGGATCCGGAGGGAATGATGAAGTCCATAAATGAAGAATCGGCGGTGGAAACAGTACAAAATCAAGAAGCTGCCAAAGATCGTTGGTACGATGCCGATGACACCGTCGCTGGAGCGCCTACTGTGAAAGATCAAAATCCGAGCCTGAGCCATCCAGGTTCAGAGAAATGTGGAACAACGGAGCCGATATTCGACGAGCTTGAAGATGCAGATCAGGATAAGCTTGGCGACAAAGAGAATAAAGTTCCTGCAGGTCTTTCAGATGAATCGCAGGCTTCAAAAGCCCTGCAAGAGGCTAGCAGCGAAGAGTTTAATGAAAATGCTGGTCGATCAACAGCTTTGGAGGATACCACTTATATTGAGGGATCGAAGGATACAACTGCAATGAATTTGGGAGTTACAGGCCTGG_-_ATGCCAGTGAAAAGGATAAAGAAACGAAGGATGAAGAATGGGACGGGGATGACGAAAGTTACAAGGAGAAGATTCATGATAAGACATCAACAGAATATGGCACCAATGTTGCATCAAAACGTGGAAATGACGAACAACAATCTATCCACGAGCCGCCCTATGAGCCAGATAGAATGGCAGAGAAAGAAAATTATGAGAATAGCGAAGAAGGTAAAAGTTATGGAGACCAGATCTATAACAAAGATCCCACAGAAAAGATTGAACCTTCATCCAAATTCGGACATGGCGAACATCAAGAACCTGGGCAAGAGGAGACCGAGAGGAGAACAGAGGAGGGTTAGTACAGATGATGTAGAAGAGGCGAATGAAGAAACTGGCAAAAGTTCGACAGGCACACCTTCTGCAGCCGAGAGCATAGTTTCGTCCAATCCTGCGGTGGAAGAGAAAGTTGAAGGGCAAGCAATGGGAATCGATGAAGATGATGTTTATAAGAAAACAAAATCAGATGACAAGAGCTTGACAGAGACACCTTCTGTAGACAAGGGTGGAGTTTCATCCAATCCTGTTGTAGAAGAGAAAGCTGATGGGCAAACGGGCGAAACGTATGAAGATGATGTTGAGGAGAAAACAAAATCTGATGGGCATGATACTGTTGCAGGAAAAAGTTACTCGGAGCAGGTGTATTCCACAGCCAGCACTGCAAAAGGTGCCCTTTACTCAGTGTTTGGATATGGAGGAGCAAAAGCTGTGCCGGATAAGCAGATTCAACCAACTGAGAGTAAGGAATGA___GTGAATCTAATGCTCAGATTCTACAGGGGACTACACTTCTGATAATATTAATTTGATCGAATGAATTTTAATTTCTTGTTTCTTCCTGGGTCAATGTGGATTGGAGCGTTTTCTGTTGAAGCACACCATTCAAATAAGCAGTCCGATGCCGCCTATCATCTGAGAATCATAGAAGATCATGCAAATAGTCTGGATTGTCGTGATATTTTAATATTTTGTAGAAGACCATGCAAGTGTTGTGGATTACTGTCGTGATAATATTTGTAAACTCAAAATGTGTGTAATGATACGATATATTTATCTCTATTGTAAGTGACATATTTGTTGTAATATTGATTATTTTTTACAATAAACATT

Fln Alignment:

AllPineV4_rep_c68714___MGIDEDDVYKKTKSDDKSLTETPSVDKGGVSSNPVVEEKADGQTGETYEDDVEEKTKSDGHDTVAGKSYSEQVYSTASTAKGALYSVFGYGGAKAVPDKQIQPTE
D5A8N7_______________MEMYEDDVDEKAKSDGKSLTDTPSAAESVVSSNPVVEAKAEGQT------------KSDGDDTVAGKSYTDKMYSTAGTAKNAFYSAFGYGGAKTVQDKEVQPTE

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
1197		11		88	0.991528
1529		3		96	0.999846
1627	2			97	0.941605
1638	97	2			0.956062
1641		2		97	0.958202
1642	97	2			0.958202
1651		2		93	0.997839
1652		2		97	0.951554
1653	2			97	0.953846
1694	3		96		0.983282
1714	3	96			0.991825
1791			93	6	0.999453
1817		20		80	0.999999
1818	20			80	0.999999
1838		16	83		0.994512
1839		16		83	0.994512
1852	33		66		0.997452
1853		33	33	33	0.997753
1854	33	33		33	0.997753
1855		66	33		0.997452
1856	33			66	1.0
2061	20		80		0.995493
2284			75	25	0.996473
2286	25	75			0.996473
2287			25	75	0.996473
2288		75		25	0.996473
2289	75		25		0.996473
2295	75	25			0.996473
2296		25		75	0.996473
2297	25			75	0.996473
2298	25		75		0.996473
2308		20		80	0.995495
2309	80		20		0.995495
2345	75	25			0.996473
2347		25	75		0.996473
2348	25	75			0.996474
2365	33		66		0.997453
2381	33	66			0.997464
2382	33	66			0.997464
2385	66	33			0.997471
2388	33			66	0.997471
2389		66	33		0.997471
2394		66		33	0.997471

SSRs (tot: 1)

Start position	End position	Sequence	Length
2048	2060	CTG CTG CTG CTG C	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain