SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene61286

Length: 708 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene61286 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Dtdp-glucose 4-6-dehydratase, putative n=1 Tax=Ricinus communis RepID=B9SN65_RICCO	-	-	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	33%
Blast2go	bifunctional polymyxin resistance	-	-	91%

Source	ECs	Term	Type	e value	Identity
Blast2go	UDP-glucuronate decarboxylase.	EC:4.1.1.35	-	0.0	91%

Source	KEGGs	Term	Identity
Blast2go	Starch and sucrose metabolism	00500	91%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	91%
Blast2go	Metabolic pathways	01100	91%

Source	GOs	Term	Type	Identity
Blast2go	nucleotide-sugar biosynthetic process	GO:0009226	Biological Process	91%
Blast2go	NAD binding	GO:0051287	Molecular Function	91%
Blast2go	UDP-glucuronate decarboxylase activity	GO:0048040	Molecular Function	91%
Blast2go	apoplast	GO:0048046	Cellular Component	91%

Source	InterPros	Term	Type	e value	Identity
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	0.0	-
Sma3	NAD(P)-binding domain	IPR016040	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
401	90	10			0.999898
402		10	90		0.999898
456	90		10		0.90298
480		10	90		0.90298
483		90		10	0.90298
533	14	85			0.993533
569	75	25			0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain