SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene61272

Length: 1682 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene61272

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	aspartic proteinase [Theobroma cacao]	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	72%
Blast2go	aspartic proteinase	-	-	78%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase A1	IPR001461	-	-
Sma3	Actinin-type, actin-binding, conserved site	IPR001589	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Saposin-like type B, 1	IPR007856	-	-
Sma3	Saposin-like type B, 2	IPR008138	-	-
Sma3	Saposin B	IPR008139	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3	Saposin-like	IPR011001	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRP2

Fln msg: Separated hits, possible frame ERROR between 1222 and 1236, query STOP codon is far from subject stop. Distance to subject end: 28 aas,

Fln protein: MEWRRILLCFVVSLYFFSSVSCADDGLVRVGLKKKSLDLKTLRAAKASMRNGCHADALIRKFGLREGRGFESDKGDYVPLKNYLDAQYFGEIGIGTPAQTFTVIFDTGSSNLWVPSSKCYFSLACYFHSKYKASESSTYKKNGKSCDIQYGSGAISGYLSQDDVTVGDLVVKDQVFTETTREPSLTFLLAKFDGLLGLGFQEIAVDKVVPVWYNMVSQGLVKEPVFSFWMNRNSEEEAGGEIVFGGVDPEHFKGEHQYTPITRKGYWQFDMGDFLIDDQSTGFCAGGCAAIVDSGTSLLAGPSGIITQINNAIGASGIITQINNTRGTNSQECKTVVSQYGDVIMELLMAQTNPQKICSQIGLCSCDGTRDVSTGIASVLxxxxxxDTMSSIGDGMCTACQMAVVWVQNQIARNQTKEQIKAYMNQLCERLPSPNGESVVDCDQISSMQQFHFRLE*

Protein Length: 458

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTATCGTAGTAGCAGAGCAGTTCGCTGGGGATCGCATCCAGAAAAGCTTTGAAT_-_ATGGAGTGGAGGAGAATACTCTTGTGTTTCGTAGTTTCGTTGTATTTTTTCTCTTCTGTTTCTTGTGCTGATGATGGACTTGTAAGGGTCGGGCTGAAGAAGAAGTCTCTGGATCTTAAAACCCTACGGGCTGCTAAAGCTTCGATGCGTAACGGCTGTCATGCGGACGCACTCATTCGGAAATTTGGTCTGCGCGAAGGTCGGGGTTTCGAGTCTGACAAGGGCGATTATGTTCCTTTGAAGAATTACTTGGACGCTCAGTATTTCGGAGAGATTGGAATTGGAACTCCAGCTCAGACTTTTACGGTCATATTTGATACCGGCAGCTCAAATCTTTGGGTGCCGTCTTCTAAATGTTACTTCTCGTTGGCTTGCTATTTCCATTCAAAGTACAAGGCATCCGAGTCAAGCACCTACAAAAAGAATGGAAAATCCTGTGATATTCAGTATGGAAGTGGTGCAATCTCTGGATACTTGTCTCAAGATGATGTCACAGTAGGGGACCTTGTTGTGAAAGACCAGGTTTTTACCGAGACAACACGGGAGCCAAGTCTAACATTCTTACTGGCCAAGTTTGATGGTCTTCTTGGGCTTGGATTTCAAGAAATTGCTGTTGACAAAGTTGTTCCAGTCTGGTATAACATGGTCAGCCAAGGGCTTGTCAAAGAACCAGTCTTTTCATTTTGGATGAACAGGAATTCAGAAGAGGAAGCTGGAGGAGAGATAGTATTTGGCGGTGTCGATCCTGAACACTTCAAGGGTGAACATCAGTATACACCTATTACTCGAAAGGGTTACTGGCAGTTTGATATGGGAGACTTCCTCATTGATGATCAATCAACAGGTTTCTGTGCTGGAGGTTGTGCTGCTATTGTAGATTCTGGAACTTCTTTGCTCGCTGGTCCATCGGGCATTATAACACAAATTAACAATGCTATTGGTGCCTCGGGCATTATAACACAAATTAATAATACCCGAGGCACCAATAGCCAGGAATGCAAAACAGTAGTATCACAATACGGAGATGTGATTATGGAGCTCTTGATGGCACAGACAAATCCTCAGAAGATCTGCTCACAGATTGGCTTGTGCTCTTGTGATGGTACAAGAGATGTTAGCACAGGAATCGCTAGTGTCTTGGAxxxxxxxxxxxxxxxGGATACAATGTCGAGCATCGGTGATGGTATGTGCACTGCTTGTCAGATGGCGGTTGTGTGGGTGCAGAACCAAATTGCTCGTAACCAGACTAAGGAGCAGATTAAGGCCTATATGAATCAGCTCTGTGAACGATTGCCAAGCCCTAATGGAGAATCAGTTGTTGATTGCGATCAAATATCAAGCATGCAACaGTTTCATTTTCGATTGGAATAA___AACATTCAGTCTCACACCAGATCAGTATATTCTTAAAGTTGGTGAAGGTTCTGTAGCGCAGTGTGTAAGTGGTTTTATGGGTTTGGATGTCCCTCCACCGTTGGGTCCTATATGGTATGTTTACCCAATTGGTTCTATATTGTTTATAGAACCTGGTTCAAATTTCAATTCAAACTTTTTAAAAGTATGTTTCTTAATTTATTCATTCATCACATTGCAGGATTCTTGGAGATA

Fln Alignment:

AllPineV4_rep_c68390___ADDGLVRVGLKKKSLDLKTLRAAKASMRNGCHADALIRKFGLREGRGF-ESDKGDYVPLKNYLDAQYFGEIGIGTPAQTFTVIFDTGSSNLWVPSSKCYFSLACYFHSKYKASESSTYKKNGKSCDIQYGSGAISGYLSQDDVTVGDLVVKDQVFTETTREPSLTFLLAKFDGLLGLGFQEIAVDKVVPVWYNMVSQGLVKEPVFSFWMNRNSEEEAGGEIVFGGVDPEHFKGEHQYTPITRKGYWQFDMGDFLIDDQSTGFCAGGCAAIVDSGTSLLAGPSGIITQINNAIGASGIITQINNTRGTNSQECKTVVSQYGDVIMELLMAQTNPQKICSQIGLCSCDGTRDVSTGIASVLExxxxxDTMSSIGDGMCTACQMAVVWVQNQIARNQTKEQIKAYMNQLCERLPSPNGESVVDCDQISSMQQFHFR
B8LRP2_______________ANDCLARIELKKKGLDQKTLQAARIVAREGGLSNEVNRKYGLRGGLSYSESARGEYVPLKNYLDAQYYGEIGLGTPPQKFTVIFDTGSSNLWVPSTKCYLSIACYFHSKYKASQSSSYCVNGKPFNIQYGSGSVSGYLGQDHVTAGDLVVKDQVFAEVTQEPGLTFLAAKFDGILGLGFQKISVGNVVPVWYNMVNQGLIKEPVFSFWMNRKVGDEEGGEIVFGGVDPNHFKGKHTYVPVTREGYWQFNMGDFLIGGQSTGFCSGGCAAIVDSGTSLLAGPSGIVAQINEAIGASGLA----------SQECKSVVSQYGDLIMELLMAQTNPQKVCSQIGLCLSDGTRDVGMRIASVLExxxxxEATSTSSSGMCAACEMAVVWAKNQIARNASKDQIMTYLNQLCDRLPNPNGQAAVDCKTYQACPLCHLQ

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1206			25	75	0.996473
1207	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain