SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene61199

Length: 888 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene61199 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	emp24/gp25L/p24 family/GOLD domain-containing protein [Arabidopsis thaliana] gb\|AAF13086.1\|AC009176_13 putative coated vesicle membrane protein [Arabidopsis thaliana] gb\|AAF21178.1\|AC013483_2 putative coated vesicle membrane protein [Arabidopsis thaliana]	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	40%
Blast2go	transmembrane emp24 domain-containing protein	-	-	82%

Source	InterPros	Term	Type	Identity
Sma3		IPR000348	-	-
Sma3	Cellulose synthase	IPR005150	-	-
Sma3	GOLD	IPR009038	-	-
Sma3	Extracellular solute-binding protein, family 3, conserved site	IPR018313	-	-

Full-Lengther Next Prediction

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
294	88		11		0.991528
362		11		88	0.991528
363		11		88	0.991528
365	11		88		0.991528
389	12		87		0.992554
440		12		87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain