SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene61142

Length: 942 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene61142

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Dehydroquinate dehydratase/shikimate dehydrogenase (Fragment) n=2 Tax=Nicotiana tabacum RepID=Q42947_TOBAC	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	68%
Blast2go	dehydroquinate dehydratase shikimate dehydrogenase	-	-	73%

Source	InterPros	Term	Type	Identity
Sma3	Dehydroquinase class I	IPR001381	-	-
Sma3	Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase	IPR006151	-	-
Sma3	Shikimate dehydrogenase	IPR011342	-	-
Sma3	Shikimate dehydrogenase substrate binding, N-terminal	IPR013708	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	3-dehydroquinate dehydratase, active site	IPR018508	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLR2

Fln msg: Distance to subject end: 235 aas, your sequence is shorter than subject: 281 - 518

Fln protein: MAQNRGCLVCCPVISRSVEETLEQMQQAKVDGADIVEIRIDLLNNFNPKADLAILLKERPLPIIITYRPKWEGGEYEGDEATRLDVLRLAIELDADYVDVELQVATDFIKSMRDKKSRMCMIMVSNHNFESTPSVEELCHLVESLQSTGADIVKFTTTATTITDVARVFQVFAYSQVPIIASVISSRGLISSILCPKFGGYLTFGSLGPGKESASGQPALTDLINIYRIKNLGKDTKVFGIIGNPVGHSKGPILHNRAFREIGLDAVYVPFLVDDLAEFLR

Protein Length: 282

Fln nts: GCAGCTTGGGCTGGAATGGGAAAtgTccTgACaTTGGCTcTAcAaTCACATCCCATTCTATTCATTCAATTAAAATCCGTCCAAGTCGCAAACCAGCA_-_ATGGCGCAAAACAGAGGATGCCTTGTTTGCTGCCCTGTCATATCACGTTCAGTGGAAGAGACACTGGAGCAAATGCAACAAGCCAAAGTTGATGGTGCAGACATCGTTGAGATCAGGATTGACCTCTTAAATAATTTCAATCCAAAGGCTGATTTAGCAATTCTGCTCAAAGAAAGACCACTGCCCATCATCATTACTTACAGGCCAAAGTGGGAGGGAGGTGAGTATGAAGGTGATGAAGCAACACGTCTTGATGTACTTCGTTTGGCTATAGAATTGGATGCCGACTATGTTGATGTGGAGCTCCAGGTGGCAACCGATTTCATAAAAAGCATGCGTGACAAGAAATCAAGAATGTGCatGATCaTGGTTTCGAATCATAATTTTGAAAGTACTCCATCAGTTGAGGAACTTTGTCATCTTGTTGAAAGTTTACAATCTACAGGAGCTGACATTGTGAAATTTACGACAACTGCCACTACTATTACTGACGTTGCCCGGGTTTTTCAAGTGTTTGCTTACTCTCAAGTTCCCATTATTGCATCGGTGATTTCTTCCAGAGGGCTAATTAGCTCGATTCTTTGCCCAAAGTTTGGTGGATATCTTACGTTTGGCTCCTTGGGACCAGGGAAGGAATCAGCTTCGGGTCAACCAGCATTGACGGATCTAATAAACATATACAGGATAAAGAACTTGGGTAAAGATACCAAGGTTTTTGGAATCATAGGAAATCCAGTAGGTCACAGCAAAGGACCAATTCTGCACAATCGGGCATTCAGAGAGATAGGACTTGATGCAGTCTATGTACCTTTTCTTGTTGATGATCTTGCAGAGTTTCTAAGGG

Fln Alignment:

AllPineV4_rep_c67594___CLVCCPVISRSVEETLEQMQQAKVDGADIVEIRIDLLNNFNPKADLAILLKERPLPIIITYRPKWEGGEYEGDEATRLDVLRLAIELDADYVDVELQVATDFIKSMRDKKSRMCMIMVSNHNFESTPSVEELCHLVESLQSTGADIVKFXXXXXXXXDVARVFQVFAYSQVPIIASVISSRGLISSILCPKFGGYLTFGSLGPGKESASGQPALTDLINIYRIKNLGKDTKVFGIIGNPVGHSKGPILHNRAFREIGLDAVYVPFLVDDLAEFLR
B8LLR2_______________CLLCIPLVGQSMEEMLSQMELARIHGADCVELRIDHVRNFNPRVDLDTLLKARTMPAIVTYRPKWEGGAYEGDEGKRLDVLRLAMELGADYIDVELQVASDFIKSISNKKRENSKIIVSNHNYQFTPSLEDLGLLVARIQSTGADIVKIATTATDITDVARIFRVLAYCQVPILALVMSERGLISRLLCPKFGGYLTFGSLEAGKESAPGQATLADMLNIYKIRGLGRDTKVFGLIGNPVSHSKGPTLHNRAFGEIGFDAIYVPFLVDDIKEFLK

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
455		40		60	1.0
460	50		50		1.0
461	50			50	1.0
464		40		60	1.0
466	50			50	1.0
468			40	60	1.0
472			40	60	1.0
477	60	40			1.0
548	11		88		0.991528
549	11	88			0.991528
552	88			11	0.991528
632	12		87		0.992554
675	14		85		0.993533
679		85		14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain