SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene61119

Length: 1596 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene61119 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Delta-aminolevulinic acid dehydratase n=1 Tax=Picea sitchensis RepID=B8LR35_PICSI	-	-	87%
FL-Next	sp=Delta-aminolevulinic acid dehydratase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	delta-aminolevulinic acid dehydratase	-	-	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	Porphobilinogen synthase	IPR001731	-	0.0	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LR35

Fln msg:

Fln protein: MGFAVVGAPFNTLTVERINNASYVGLWRTGIFCRPSSLCVKSRAPVKKQLIRAEAANVTQTRKTIEECEAAVIAGNPPPAPAVPPKPHSPHGTPAISPITILKRPRRNRKSATLRAIFQETTISPANFILPLFIHEGEEDTPIGAMPGCYRLGWRHGLIEEVYKARDVGVNSVVLFPKIPDALKSPTGDEAYNENGLVPRAIRLLKDKYPDMVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVAQARAGADVVSPSDMMDGRVAAIRVALDREGFQDVSIMSYTAKYASAFYGPFREALDSNPRFGDKKTYQMNPGNYREALIESGTDEDEGADILMVKPAMPYLDVIRLLRDNSSLPISAYQVSGEYSMIKAAAAKGMLDETKAMMESLLCIKRAGADAILTYFALQAARHLCADGK*

Protein Length: 429

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTCACAGTAAAGTTCTGCGAGGGTTATTATGTTTTGAATCGGTATATCTCTTCAAATAAGAGAGTGAGCTACCCTCTTTCTTTTGGAGCATAGCAGTAATC_-_ATGGGATTTGCAGTGGTTGGTGCACCTTTTAACACTCTAACTGTGGAACGCATAAATAATGCGAGCTATGTTGGTTTGTGGCGTACCGGCATCTTCTGCCGGCCATCTTCCTTGTGTGTTAAGAGTCGAGCACCTGTAAAAAAGCAGTTAATAAGAGCAGAGGCTGCGAATGTCACACAAACAAGAAAAACTATTGAGGAATGTGAGGCAGCTGTTATAGCAGGAAATCCACCCCCGGCGCCTGCTGTTCCACCCAAGCCTCATTCTCCACATGGAACTCCAGCTATTTCTCCTATTACAATATTGAAACGTCCTCGTCGCAACCGCAAATCAGCCACTCTGAGAGCTATCTTCCAGGAAACAACTATATCTCCAGCAAATTTTATCCTTCCCCTTTTCATTCATGAAGGGGAAGAGGATACCCCGATAGGAGCAATGCCAGGTTGTTACAGGCTCGGTTGGCGGCATGGACTAATTGAAGAGGTATATAAGGCTCGCGATGTTGGTGTTAACAGTGTGGTGCTTTTCCCCAAAATTCCCGATGCTCTGAAGTCACCAACAGGGGATGAAGCCTACAATGAGAATGGGCTTGTACCTCGAGCCATAAGACTTCTCAAGGACAAGTATCCAGATATGGTGATTTACACTGATGTTGCTTTGGATCCATACTCGTCTGATGGTCATGACGGAATTGTTAGAGAAGATGGGGTGATTATGAATGATGAAACAGTCCATCAGCTATGTAAGCAGGCCGTTGCCCAGGCTCGGGCAGGAGCTGATGTTGTAAGTCCAAGTGATATGATGGATGGGCGTGTTGCAGCCATTCGAGTTGCGTTAGATAGAGAAGGTTTTCAGGATGTGTCTATTATGTCATATACAGCAAAATATGCAAGTGCATTTTATGGACCTTTCAGAGAAGCTCTTGATTCTAACCCACGATTTGGAGACAAGAAAACTTATCAGATGAATCCTGGAAACTACCGAGAAGCTCTTATTGAATCTGGTACTGATGAAGACGAGGGAGCTGATATTCTAATGGTTAAGCCAGCTATGCCCTATTTGGATGTGATCAGGCTTCTACGAGACAACTCATCATTACCAATATCTGCATACCAGGTTTCAGGTGAATACTCAATGATTAAAGCTGCAGCTGCTAAAGGAATGCTGGATGAGACAAAGGCAATGATGGAATCACTTCTTTGTATTAAACGTGCTGGTGCAGATGCAATTCTTACTTATTTTGCCTTGCAAGCTGCAAGGCATTTGTGTGCAGATGGCAAGTAA___AAGAGGGACCTTACCTTCTCAGTGCTCACTCCAAGTTGTCTTTGGAAGTGCAGGTTGTGAACATCTTTCAGGACTAATATTTTGAGTTTCAATTAGTTATCACTTATATTTGCCTTGCAAGCGGCATTGCAGTTGTGTGCAGGCAGGGAGTGGAAGATGGACCTTAGCAATTTTAATAACTATA

Fln Alignment:

AllPineV4_rep_c67448___MGFAVVGAPFNTLTVERINNASYVGLWRTGIFCRPSSLCVKSRAPVKKQLIRAEAAN---VTQTRKTIEECEXXXXXXXXXXXXXXXXXXXXPHGTPAISPITILKRPRRNRKSATLRAIFQETTISPANFILPLFIHEGEEDTPIGAMPGCYRLGWRHGLIEEVYKARDVGVNSVVLFPKIPDALKSPTGDEAYNENGLVPRAIRLLKDKYPDMVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVAQARAGADVVSPSDMMDGRVAAIRVALDREGFQDVSIMSYTAKYASAFYGPFREALDSNPRFGDKKTYQMNPGNYREALIESGTDEDEGADILMVKPAMPYLDVIRLLRDNSSLPISAYQVSGEYSMIKAAAAKGMLDETKAMMESLLCIKRAGADAILTYFALQAARHLCADGK
B8LR35_______________MAFAVVGAPFNTLTVEHINNAGYVGLRRTSIFCPPFSLCVKSQSAGKKQLIRAEAAINTLITETRKTIEECEAAVIEGNPPAAPAVPPKPQSPPGTPAISPIPLMRRPRRNRKSATLRAAFQETTISPANFILPLFIHEGEEDTPIGAMPGCYRLGWQHGLIEEVYKARDVGVNSLVLFPKIPDALKSPTGDESYNENGLVPRAIRLLKDKYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVAQARAGADVVSPSDMMDGRVAAIRLALDREGFQDVSIMSYTAKYASAFYGPFREALDSNPRFGDKKTYQMNPGNYREALIESCTDEEEGADILMVKPAMPYLDVIRLLRDNTSLPISAYQVSGEYSMIKAAAAKGMLDETKAMMESLLCIKRAGADAILTYFALQAARHLCGDGK

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
608		33	66		0.997452
978	14	85			0.993533
979	14	85			0.993533
981			14	85	0.993533
982	85			14	0.993533
1061		80		20	0.995493
1093	20			80	0.995493
1094		20		80	0.995493
1095	20		80		0.995493
1096		80		20	0.995493
1184	80		20		0.995493
1185	80	20			0.995493
1186			20	80	0.995493
1188	20		80		0.995493
1309		50		50	1.0
1329		20		80	0.995493
1424			70	30	1.0
1458	33	66			1.0
1480	11		88		0.923564
1482	11	33		55	1.0
1483	88			11	0.923564
1508		87	12		0.992554
1512	12	87			0.992554
1513			12	87	0.992554
1515		12		87	0.992554
1516	12			87	0.992554
1518			12	87	0.992554
1519			12	87	0.992554
1521		12	87		0.992554
1524	87	12			0.992554
1543	85			14	0.993533
1544	85			14	0.993533
1554	20	80			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain