SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene61116

Length: 740 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene61116 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cytochrome b5 reductase isoform II n=3 Tax=Andropogoneae RepID=Q8W2K4_MAIZE	-	-	5.00264e-43	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	cytochrome b5 reductase	-	-	0.0	89%

Source	InterPros	Term	Type	Identity
Sma3	Oxidoreductase FAD/NAD(P)-binding	IPR001433	-	-
Sma3	Flavoprotein pyridine nucleotide cytochrome reductase	IPR001709	-	-
Sma3	Crotonase, core	IPR001753	-	-
Sma3	NADH:cytochrome b5 reductase (CBR)	IPR001834	-	-
Sma3	Oxidoreductase, FAD-binding domain	IPR008333	-	-
Sma3	Ferredoxin reductase-type FAD-binding domain	IPR017927	-	-

Full-Lengther Next Prediction

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
548	4		96		0.99411
552	4			96	0.99411
554		96	4		0.99411
555			4	96	0.99411
556		96		4	0.99411
560	4	94		2	0.967557
608	95			4	0.996252
610	4		95		0.996252
617	4			95	0.996599
664		92	7		0.999602
670		8		92	0.999718
674	87		8	4	0.999414
676		12		87	1.0
682		8	4	86	0.999539
683		4	8	86	0.999539
688	11	83		5	0.999887
689		88	11		0.999937
715	25			75	0.996473
716		75	25		0.996473
717		75		25	0.996473
718			25	75	0.99649
719	50			50	1.0
720		50		50	1.0
723			66	33	0.997458

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain