SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene61042

Length: 944 nt

Origin of reads: Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene61042 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Thaumatin-like protein L2 n=3 Tax=Pinus monticola RepID=D3IZ06_PINMO	-	-	97%
FL-Next	tr=Thaumatin-like protein L2; Pinus monticola (Western white pine) (Strobus monticola).	-	-	97%
Blast2go	thaumatin-like protein	-	-	85%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	Thaumatin, pathogenesis-related	IPR001938	-	-
Sma3	Proteinase inhibitor I2, Kunitz metazoa	IPR002223	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Thaumatin, conserved site	IPR017949	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	-

Full-Lengther Next Prediction

SNPs (tot: 53)

Position	A %	C %	G %	T %	Probability
692	89	10			0.999919
701		5	83	11	0.999887
706		83	5		0.999887
707			5	83	0.999887
708			11	88	0.999937
712	16			83	1.0
713	83	5	11		0.999887
715		88		11	0.999952
717	12			87	0.999964
718		12		87	0.999964
722	87		12		0.999964
732	18	81			0.999994
735		16	83		0.999991
741	81		18		0.999994
768	16	83			0.999991
772		75	25		1.0
773	16		83		0.999991
784			90	10	0.90298
787			20	80	0.999996
789	10	90			0.90298
791			88	11	0.923564
792			11	88	0.923564
797		77	11		0.968132
799		88		11	0.923565
800	11	77	11		0.968133
803	77		11	11	0.968132
804			11	88	0.923564
805	11	11		77	0.968132
806	12	87			0.992554
807	12	12		75	0.975346
809	12	12	75		0.975346
811	12		12	75	0.975346
812	14			85	0.993533
814			14	85	0.993533
816		14		85	0.993533
817	14			85	0.993533
818		14	85		0.993533
819			14	85	0.993533
820	14			85	0.993533
822		85	14		0.993533
841		40		60	1.0
842		40	60		1.0
847	50			50	1.0
848		50		50	1.0
849	50			50	1.0
851	50	50			1.0
853	50	50			1.0
854	60	40			1.0
855			60	40	1.0
859	60			40	1.0
861	40		60		1.0
862	60		40		1.0
863		60		40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain