SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene60969

Length: 728 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene60969 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Calcium binding protein with EF-hand motif (Fragment) n=4 Tax=Pseudotsuga RepID=C6F9S2_PSEMZ	-	-	3.0e-35	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Blast2go	calcium binding protein with ef-hand motif	-	-	0.0	80%

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3		IPR014778	-	-
Sma3		IPR015609	-	-
Sma3	Myb-like domain	IPR017877	-	-
Sma3	SANT domain	IPR017884	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Full-Lengther Next Prediction

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
108	33			66	0.997452
492			13	86	0.999973
593		83	16		0.999991
594	16			83	0.999991
596		83		16	0.999991
598	16	83			0.999991
602		16		83	0.999991
603	83	16			0.999991
605	15			84	0.999986
606			15	84	0.999986
608			84	15	0.999986
611		15	84		0.999986
614	83	16			0.999991
615	83		16		0.999991
618		90		10	0.90298
619			10	90	0.90298
620	10	90			0.90298
622	90			10	0.90298
623	90		10		0.90298
624	90		10		0.90298
627	10			90	0.90298
634		9	18	63	0.999997
636	11	22		55	0.999999
637	20		20	60	0.999999
639		22		77	0.999999
643		20	20	60	0.999999
645	20	60		20	0.999999
647	20		80		0.999996
648	75	25			1.0
649	75		25		1.0
652		75	25		1.0
687	75		25		0.996473
688	75			25	0.996473
690	25		75		0.996473
696		25	75		0.996473
699	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain