SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene60968

Length: 1036 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene60968

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	40S ribosomal protein S11-1 n=11 Tax=core eudicotyledons RepID=RS111_ARATH	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	40s ribosomal protein s11	-	-	95%

Source	GOs	Term	Type	Identity
Blast2go	cell wall	GO:0005618	Cellular Component	95%
Blast2go	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	95%
Blast2go	membrane	GO:0016020	Cellular Component	95%

Source	InterPros	Term	Type	e value	Identity
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	0.0	-
Sma3	Ribosomal protein S17	IPR000266	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
358	16		83		0.999991
713		10		89	0.999919
788			12	50	1.0
790			14	85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain