SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene60962

Length: 1656 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene60962 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	B-cell receptor-associated protein 31-like containing protein n=5 Tax=Andropogoneae RepID=B6U1I6_MAIZE	-	-	8.99634e-43	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Blast2go	b-cell receptor-associated protein 31-like containing protein	-	-	0.0	67%

Source	InterPros	Term	Type	e value	Identity
Sma3	B-cell receptor-associated 31-like	IPR008417	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8P4

Fln msg:

Fln protein: MIQLLSTLVIAEGIVALLLMINIPPFRKLLMKALDRTKMNSGPAMVRTLAGAMVVILASSLTSIMKIHARTMQLGAVTPTDQILLKTHMLEASLMGYALFLGLVIHRLHHFLRKIRGLKATVDTLKMQAGGAQVSPKDEKEQTNSKATKLLKGEIAGLRQKLQKLTLDCEMMENETKSAEANAKSLQKQAEGFLMEYDRLLEDNQNLQNQLSALDKTSSKLDNKKDA*

Protein Length: 229

Fln nts: CGTCGTGACCTTGGCTGTCACTAAAAATTCAGGCTCATGTTCTAAATCTAGCGACAGAAGGCAACTTCCATGTTGTTGCCCAGTTGACCCCTATCGCGGAGGCGTTAGCGCTCGAGGATTTTGGGGGTTTTCGACGCTGATGGATTTACTCACCCACGAAAATTTCAGGGCCAAGTGGTTGTTCACTTTAGTTACTAAATAAAAATGAAGAAAACCGTGCAAAAATAGATGCGGTGGCCTCAAAGACAAGCATAAGAGTCGGTCGGTAGCCACCATGAATGCACGAAAGGTAGAATAAAGAGTAGCCATTACTTCCGTAAGCCTCAGAGGCGCAACGAATCTCTAATTTGGTCCGAAGCGTCTGTATTCTCTGTGTGTTTGGAATTCATTCAGACAACAAGATTTACGAATTGATCACCATTTTAATTCAATTCAAGAAGCGGAATCTGTGATCCAAG_-_ATGATCCAACTATTGTCCACTCTGGTGATAGCAGAGGGCATAGTTGCATTGCTTTTGATGATAAACATACCCCCATTTAGAAAATTACTGATGAAGGCCCTTGATAGGACCAAGATGAACAGTGGCCCTGCCATGGTTAGAACTCTTGCAGGTGCAATGGTTGTCATTCTGGCGTCCAGCCTTACCAGTATTATGAAAATACACGCACGGACAATGCAGCTGGGTGCAGTAACTCCAACTGACCAGATTCTTTTGAAAACCCATATGCTGGAGGCTTCTTTGATGGGATATGCTCTCTTTCTTGGATTGGTCATTCATCGTCTGCACCACTTTCTTCGAAAGATACGTGGCCTTAAAGCTACCGTAGATACATTAAAAATGCAGGCCGGAGGTGCTCAGGTATCCCCCAAGGACGAAAAAGAACAAACTAATTCCAAGGCGACAAAACTGTTGAAGGGTGAGATAGCTGGGCTGAGACAAAAGTTACAAAAGTTGACTTTAGATTGTGAGATGATGGAAAATGAGACCAAGTCGGCTGAAGCAAATGCCAAATCTCTTCAGAAGCAAGCTGAGGGATTTCTGATGGAGTATGATCGTCTTTTGGAGGACAATCAAAATCTTCAAAACCAGTTATCAGCATTGGATAAAACGTCTTCAAAATTAGATAACAAAAAAGATGCATAA___GATTCTCATTTGCCAATGTATTTATATCAAAACTTCAAGTGCTCTTAATGACTGGATAGGCTGCATGAGTGATATTTACAGCGCCTCATGAAATAGGTCCAGGCAACGTTCAAACCAAGTCCATGGTCAACCTACAAACTGCTTAATTTACTTTATATTTAAGGTTCATCTTCGCCATGTGACTGGAGATAGCCCTCTAACAAGAGTTATATTGCTAGGTTTTGAATGACTAATTTTGGTGCACCGAAGGCAGAGGGTCTTCCTTAACCAAAGCCATTTCAAAATTAAAATAGTTTTTCGTTTTCAGCTGTATACCTCCTACACAAAAGTTTTGCTATAACGTAATTGCATGGTAAGATGTGGAGTATTGTGTTTTACATGTCAGGGGTATGAACTAGAAGTCTTTCAACTGTATTTTGAAAGTTTATTTGTCAATGACCCTTTCATTTATGCCATCTTAGGGGTGTTAATTTGATAGAGAATTGCTAATGTATCAAGAAACTTTTTAAATTTT

Fln Alignment:

AllPineV4_rep_c66465___MIQLLSTLVIAEGIVALLLMINIPPFRKLLMKALDRTKMNSGPAMVRTLAGAMVVILASSLTSIMKIHARTMQLGAVTPTDQILLKTHMLEASLMGYALFLGLVIHRLHHFLRKIRGLKATVDTLKMQAGGAQ---VSPKDEKEQTNSKATKLLKGEIAGLRQKLQKLTLDCEMMENETKSAEANAKSLQKQAEGFLMEYDRXXXXXXXXXXXLSALDKTSSKLDNKKD
D5A8P4_______________MIQLLFTLVFAQGALALFLMANIPPLRKLIIKILDQTKTGKGSAIVKTLGGTMLVILASSITSILKIQTRSVKMGTIAPTDQILMRTHLLEASLMGFALFLAIIIDRLHHYIRELSGLRMNMESLRKQAKSSQEEYFRLKEEKEGSNEMT--LLKDEIADLKQKLQKLTLESKEKEREAEVAESNALALRKQSEGFLLEYDRLLEDNQNLRSQLATFDRKFSRSDSKKN

SNPs (tot: 48)

Position	A %	C %	G %	T %	Probability
1348		2	87		1.0
1349	89	10			1.0
1350		10	87	2	1.0
1351		10	89		1.0
1353	10			89	1.0
1388		91		8	1.0
1392		5	86	2	0.956602
1396		5	2	88	0.982716
1397		11		88	1.0
1449	91	8			0.999807
1450		9		72	1.0
1502	11			88	0.999937
1507	11	88			0.999937
1548		81		18	0.999994
1549		81	18		0.999994
1550	18	81			0.999994
1551		81	18		0.999994
1552		81		18	0.999994
1553	72	9	18		0.999994
1555	81	18			0.999994
1557			15	84	0.999986
1560	15			84	0.999986
1561	15	84			0.999986
1563	83		16		0.999991
1564			83	16	0.999991
1566	16		83		0.999991
1569	83		16		0.999991
1601	62	37			1.0
1602	62	12		25	1.0
1603		75	25		1.0
1604	87	12			0.992554
1605	12		25		1.0
1608	28		71		1.0
1609	71	28			1.0
1612		28		71	1.0
1613		33		66	1.0
1614	28		71		1.0
1615	28	71			1.0
1616		71	28		1.0
1617			28	71	1.0
1621		28		71	1.0
1623	28			71	1.0
1627		20		80	0.995493
1628	80	20			0.995493
1629		20	80		0.995493
1664		25	75		0.996473
1667	75	25			0.996473
1669			75	25	0.99649

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain