SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene60905

Length: 987 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene60905

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9S0D8_RICCO	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	67%
Blast2go	ring finger and chy zinc finger domain-containing protein 1-like	-	-	84%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-
Sma3	Zinc finger, CHY-type	IPR008913	-	-
Sma3	Zinc finger, CTCHY-type	IPR017921	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9X0

Fln msg: STOP codon was not found. Distance to subject end: 15 aas,

Fln protein: MEVECCSPRSSAQGCKIDLKRTMVVEDTLNQGCMQYGCSHYRRRCQIRAPCCNEVFDCRHCHNEAKNSMDVHPLDRHDVPRHEVRKVICSLCRTEQDVQQTCVTCGVCMGKYFCEKCNFFDDEDSKQQYHCDGCGICRTGGNDNFFHCYKCGCCYSIQLKDCHPCVEKAMHHNCPVCFEYLFDSTKLISVLPCGHTIHMHCLKEMHEHLQFACPVCSKSVCDMSKLWEKLDREVALTPMPEAYQHKMVWILCNDCGVTSEVNFHIVAHKCQ

Protein Length: 272

Fln nts: ATGGGGGGCCACCTGTTTTGAACGCTCGCGGACGGTTCTTGAGATATTTTGCTTATATTTAAATAAATCAGTAGGTCTCCTATGGGGATTGGAGCAGTATACCGCTTTAGAGAAACCGGATTGCAGGTACATTGTGAGAAGGCAGAGATTTGAAGGGGATTTGAATTTGAATC_-_ATGGAAGTTGAGTGTTGCAGCCCTCGGTCTTCTGCTCAGGGGTGTAAGATTGACCTGAAGCGAACGATGGTGGTGGAAGATACGCTTAATCAAGGATGCATGCAATATGGATGTTCACACTACCGCCGGAGATGTCAAATAAGGGCTCCGTGTTGTAATGAAGTCTTTGACTGTAGGCATTGTCATAATGAGGCCAAAAATTCAATGGATGTCCATCCACTTGACAGACATGATGTACCGCGCCATGAAGTTCGAAAGGTTATCTGTTCACTTTGTAGAACTGAACAAGATGTTCAGCAAACCTGCGTTACTTGTGGTGTTTGTATGGGAAAGTACTTTTGTGAAAAATGCAATTTCTTTGATGACGAGGACTCAAAACAGCAATACCACTGTGATGGATGTGGAATTTGCAGAACTGGTGGCAACGATAATTTCTTCCACTGTTATAAATGTGGATGTTGCTACTCTATACAGTTGAAGGATTGCCACCCTTGTGTGGAAAAAGCAATGCACCACAACTGCCCTGTGTGTTTTGAGTATTTATTCGACTCTACAAAGCTTATCAGCGTATTGCCTTGTGGTCATACTATTCACATGCATTGCTTGAAAGAGATGCACGAGCATCTTCAATTTGCTTGTCCAGTGTGCTCCAAATCTGTCTGTGATATGTCTAAATTATGGGAGAAACTTGACCGAGAGGTTGCTTTGACTCCAATGCCTGAAGCTTACCAGCACAAAATGGTTTGGATCTTATGCAATGACTGTGGAGTAACTTCTGAAGTAAATTTTCACATTGTTGCACACAAGTGTCAAA

Fln Alignment:

AllPineV4_rep_c66207___DTLNQGCMQYGCSHYRRRCQIRAPCCNEVFDCRHCHNEAKNSMDVHPLDRHDVPRHEVRKVICSLCRTEQDVQQTCVTCGVCMGKYFCEKCNFFDDEDSKQQYHCDGCGICRTGGNDNFFHCYKCGCCYSIQLKDCHPCVEKAMHHNCPVCFEYLFDSTKLISVLPCGHTIHMHCLKEMHEHLQFACPVCSKSVCDMSKLWEKLDREVALTPMPEAYQHKMVWILCNDCGVTSEVNFHIVAHKC
D5A9X0_______________DRLNTGKMEHGCDHYRRRCRIRAPCCNEIYDCRHCHNEAMSHLK-DPKQRHELPRYKVERVICSLCDTEQNVNQVCENCGVKMGEYFCSKCKFFDDDISKKQYHCDDCGICRVGGRDNFFHCQKCGCCYTVGLQKAHSCVENSMRHNCPVCFEYLFDSLKPIAVLRCGHTMHGDCLSEMQMHSQYSCPMCSKSVCDMSLIWEQLDQEIAATPMPNDYQDKMVWILCNDCDTFSEVQFHIVAQKC

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
445	80	20			0.995493
791	85			14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain