SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene60853

Length: 1056 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene60853

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_11.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7T9P1_VITVI	-	-	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	ctp:phosphorylcholine cytidylyltransferase	-	-	90%

Source	InterPros	Term	Type	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Cytidylyltransferase	IPR004820	-	-
Sma3	Cytidyltransferase-related	IPR004821	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUF9

Fln msg: Warning!, your query overlaps and the subject is separated, your sequence is shorter than subject: 287 - 315

Fln protein: SCAEIVYEPPVRFEPHPSPDPVKGERTEKPVRVYADGIYDLFHFGHARSLEQAKKLFPNTCLLVGCCNDEVTRRYKGKTVMTEAERYESLRHCRWVDEVIPDAPWVINQEFLDKHKIDYVAHDALPYADTSGAGKDVYEFxxAGRFKETKRTDGISTSDVIMRILKGYNDYVMRNLDRGYTRKDLGVSYVKEKQLRVNMGITKIRQKVKEQQEQMGKKLHTVAKTAGMHHSEWVENADRWVAGFLEKFEEGCHKMETAIKDKIQESLKRQNSRSLSPSEMLENTVQ*

Protein Length: 288

Fln nts: AGCTGTGCAGAGATTGTCTACGAGCCGCCAGTGAGATTCGAACCGCACCCATCTCCAGATCCCGTGAAGGGAGAGAGGACTGAGAAGCCCGTCAGGGTCTATGCGGATGGAATTTATGATTTGTTTCACTTTGGGCATGCGCGATCACTGGAACAGGCCAAGAAACTGTTTCCAAACACATGCCTCCTTGTGGGTTGCTGCAATGATGAAGTCACTCGCAGGTATAAGGGAAAAACTGTAATGACTGAAGCTGAGCGCTATGAATCCCTTCGTCATTGCAGGTGGGTTGACGAAGTTATCCCAGATGCTCCATGGGTGATCAATCAAGAATTCTTAGACAAGCATAAGATTGACTATGTAGCCCATGATGCCCTTCCGTATGCCGATACCAGTGGAGCTGGGAAAGATGTCTATGAATTTxxxxxxGCTGGAAGATTTAAGGAAACAAAGCGGACCGATGGTATTTCGACATCGGATGTCATAATGAGGATACTTAAAGGCTACAATGACTATGTTATGCGCAACCTTGATCGTGGATACACAAGGAAAGACCTTGGAGTTAGCTATGTGAAGGAAAAGCAATTGAGGGTCAACATGGGAATAACAAAAATACGTCAAAAAGTGAAGGAACAACAAGAGCAAATGGGGAAAAAGTTACATACGGTTGCCAAGACAGCTGGCATGCATCACAGTGAATGGGTTGAGAATGCTGATCGTTGGGTGGCTGGCTTTTTAGAAAAGTTTGAAGAGGGGTGTCATAAGATGGAAACAGCAATTAAAGACAAAATACAGGAGAGCCTGAAGAGGCAGAACTCAAGAAGTCTATCACCTTCAGAAATGCTGGAGAACACAGTGCAGTAGCATAAACTTGTGCTATCTGCCAAGTGATGCATTGATTCTTACTAGACAATTTTTGTATGTCTCCTACATTTTGACATTTTGTTCAACCGCTGGTTGTTTATATCGTTTCTCTTTCATCCTTTGTTAACCGTTTCAAGTCCTATGGTGTTTACGGTCAAGCACCGTGATGCTCATAAGCTATGTAATAAATCAAATTG

Fln Alignment:

AllPineV4_rep_c65952___SCAEIVYEPPVRFEPHPSPDPVKGERTEKPVRVYADGIYDLFHFGHARSLEQAKKLFPNTCLLVGCCNDEVTRRYKGKTVMTEAERYESLRHCRWVDEVIPDAPWVINQEFLDKHKIDYVAHDALPYADTSGAGKDVYEFVxSAGRFKETKRTDGISTSDVIMRILKGYNDYVMRNLDRGYTRKDLGVSYVKEKQLRVNMGITKIRQKVKEQQEQMGKKLHTVAKTAGMHHSEWVENADRWVAGFLEKFEEGCHKMETAIKDKIQESLKRQNSRSLSPSEML
A9NUF9_______________SCAETVYEPPVRFEPHPSPDPVKSEWTEKPIRVYADGIYDLFHFGHARSLEQAKKLFPNTFLLVGCCNDEVTRRYKGKTVMTEAERYESLRHCRWVDEVIPDAPWVINREFIDKHQIDYVAHDALPYADTSGAGKDVYQFVxSVGKFKETRRTNGISTSDVIMRMLKGYNEYVMRNLDRGYTRKDLGVSYVKEKQFRVNMGITKLRQRVREQQEQMGKKLHTVAKTAGMHHSEWVENADRLVAGFLEKFEEGCHMMETAIKEKIQESLKRQNSRSPSPSKMV

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
553		33		66	0.997452
555			66	33	0.997452
556	66	33			0.997452
559			33	66	0.997452
561		33	66		0.997452
570	66	33			0.997452
571			66	33	0.997452
573	66			33	0.997452
574	66	33			0.997452
576	66	33			0.997452
577			66	33	0.997452
676	83		16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain