SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene60823

Length: 1409 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene60823 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	WRKY transcription factor NtEIG-D48 [Nicotiana tabacum]	-	-	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	wrky transcription factor 11	-	-	58%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	58%

Source	InterPros	Term	Type	Identity
Sma3	Major intrinsic protein	IPR000425	-	-
Sma3	DNA-binding WRKY	IPR003657	-	-
Sma3	Zn-cluster domain	IPR018872	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AD76

Fln msg:

Fln protein: MAVEMLDSRNFMDRDVHQAASATLESVQNLIQLISRHREMQDERESQCGSAAEMAANRFKRVVSMLGTTTGHARFRKAPAGSSVPAPKISPPFEPGHANMSSAAAASCSSQEPLKDSEGFISPAPLNNNTLFRPTPLHVQAPAQNPVMDLSPQQPKISLVPVNSDYSFMGSRSFKESVISSSPLSSTNSFISTLTASDPCDKTSILVRSLSPTAVGRPPLSSSKKACIHGKPDDLSGKCNTTGGRCHCSSKRKKSRVKRTIRVPAVSAKLADIPSDEFSWRKYGQKPIKGSPHPRGYYKCSTVRGCPARKHVERALDDPNVLIVTYEGEHSHSHSVSENTGLVLDS*

Protein Length: 348

Fln nts: ATGGGGGATTTTGACTCGGGGATTTGAAGTTGCAGTAAATTGGGGAATcTGaTCCGGGCTGCAAGAAGAAGATAAGGCGTCGTGACCTTGGCTAGTCACTCAGCTGCTTTATGCGGAGAGATGAATTCGGGGGGCTCTGCCGAGAATTGCAGGGGATTTTGGCCGGAGAGTTGCTGAAGATTCAAGAAGTTCTGGATTTGAGTGAAAAGAC_-_ATGGCCGTAGAGATGCTGGACTCCAGGAATTTCATGGACCGCGACGTGCACCAGGCGGCTTCTGCAACGCTGGAGAGCGTGCAGAATCTGATACAATTAATATCCCGGCACCGGGAAATGCAAGATGAAAGAGAGAGCCAGTGCGGGTCTGCCGCAGAAATGGCAGCAAATCGATTTAAAAGGGTTGTTTCTATGCTCGGAACCACGACAGGCCATGCTCGCTTCAGAAAAGCCCCAGCGGGATCTTCAGTTCCGGCTCCCAAAATTTCTCCCCCTTTCGAACCCGGCCATGCGAATATGTCTTCTGCCGCTGCTGCATCTTGTTCTTCTCAAGAACCCTTGAAGGATTCTGAAGGTTTTATCTCCCCTGCGCCATTAAATAATAACACCCTGTTCCGTCCCACCCCGTTGCACGTCCAGGCCCCTGCACAGAACCCTGTTATGGACTTAAGCCCTCAGCAGCCCAAGATTTCATTAGTGCCAGTAAATTCAGATTACAGCTTCATGGGTTCCAGGTCCTTTAAAGAGTCAGTGATCTCTTCCTCCCCATTATCCTCCACTAACTCCTTCATTTCAACACTCACAGCATCGGATCCGTGCGATAAAACTTCTATACTGGTTCGATCTCTCAGCCCAACAGCCGTAGGCCGACCGCCATTATCGTCCTCTAAGAAAGCTTGCATCCATGGAAAACCTGACGATCTCTCAGGAAAGTGTAACACTACAGGCGGACGCTGCCACTGCTCTTCAAAACGCAAGAAGTCCAGAGTGAAAAGAACTATCAGAGTACCTGCAGTCAGTGCAAAATTGGCGGACATTCCATCTGATGAATTCTCATGGCGAAAATATGGACAGAAGCCCATTAAGGGCTCTCCACATCCAAGAGGCTATTACAAATGCAGCACAGTGAGAGGTTGCCCTGCAAGAAAGCACGTAGAACGCGCCCTGGACGATCCAAACGTATTGATTGTAACATATGAGGGCGAACACAGCCATTCTCATTCTGTATCTGAAAACACAGGCCTGGTACTGGATTCGTGA___GACCCACATACAGACAAAGGCATTATTCTAGTTTTATATTACGCTACAGAATCCGCCATTATTTCAGGCGGGATGGTGACTGTTTTAGCGCAATCTCCATGGGCGTTGCATGCCCACTACAGTGTTTTTGCAATTTGGTACGAGACAAGATTAATGC

Fln Alignment:

AllPineV4_rep_c65745___MAVEMLDSRNFMDRDVHQAASATLESVQNLIQLISRHREMQDERESQCGSAAEMAANRFKRVVSMLGTTTGHARFRKAPAGSSVPAPKISPPFEPGHXXXXXXXXXXXXSQEPLKDSEGFISPAPLNNNTLFRPTPLHVQAPAQNPVMDLSPQQPKISLVPVNSDYSFMGSRSFKESVISSSPLSSTNSFISTLTASDPCDKTSILVRSLS-PTAVGRPPLSSSKKACIHGKPDDLSGKCNTTGGRCHCXXXXXXXXXXRTIRVPAVSAKLADIPSDEFSWRKYGQKPIKGSPHPRGYYKCSTVRGCPARKHVERALDDPNVLIVTYEGEXXXXXSVSENTGLVLDS
D5AD76_______________MAVEMLDSRNFMERDVHQAASATLESVQNLIQLLSRHREMQDEGESQCGFAAEIAANRFKRVVSMLGTTTGHARFRKAPTGSSVLSPKICPSFEAGYANISASSSSS---HEAFRDSEGFISPAPLNNNTLYRPTPLHVQAPPQSPVMDSTPQQHKIPLLPMNSDYSFMGSRPFKEPVISSPPISSTNSFISSLTASDPCDKTSMLVRSLSSPTAVGRPPLSSSKKACIHGKPDDLSGKCNTTGGRCHCSSKRKKSRVKRTIRVPAISAKLADIPSDEFSWRKYGQKPIKGSPHPRGYYKCSTVRGCPARKHVERALDDPNVLIVTYEGEHSHSHSVSENTGLVLDS

SNPs (tot: 53)

Position	A %	C %	G %	T %	Probability
1046	14		85		1.0
1048			8	91	1.0
1049			8	91	1.0
1051		7	92		1.0
1052	7	92			1.0
1053		7		92	1.0
1055	7	92			1.0
1057	92		7		1.0
1120	96		3		0.991164
1260			4	95	0.995881
1261	4	95			0.996252
1265	4		95		0.996599
1271	95		5		0.997749
1272	94		5		0.997984
1276	2	87	10		1.0
1277	10	87	2		1.0
1278	2	84	12		1.0
1279		5		94	0.997984
1281	10	89			1.0
1282	86	13			1.0
1284	2		10	86	1.0
1285		10		89	1.0
1287	10			89	1.0
1288	11	88			1.0
1294	88	11			1.0
1299	3	86			1.0
1313		93	6		0.999453
1326	15	3	80		1.0
1327	12	88			1.0
1328	60	4			1.0
1329			48	4	1.0
1331		4	4	50	1.0
1332	4	45	50		1.0
1334			54	4	1.0
1335		45		54	1.0
1336		45	54		1.0
1341	36		63		1.0
1343		63	36		1.0
1344	63		36		1.0
1345	63		5	5	1.0
1347			73	26	1.0
1348			27	66	1.0
1350	66	33			1.0
1354		66		33	1.0
1370	16	83			0.994512
1371			16	83	0.994512
1380	25	75			0.996473
1381	25	25	50		0.995533
1382		25	75		0.996473
1383	75		25		0.996473
1384			33	66	1.0
1390		33		66	0.997452
1391			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain