SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene60787

Length: 875 nt

Origin of reads: Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene60787 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	60S ribosomal protein L18-3 [Arabidopsis thaliana] sp\|Q940B0.1\|RL183_ARATH RecName: Full=60S ribosomal protein L18-3 gb\|AAL07220.1\| putative 60S ribosomal protein [Arabidopsis thaliana] gb\|AAM67529.1\| putative 60S ribosomal protein [Arabidopsis thaliana]	-	-	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	60s ribosomal protein l18-3-like	-	-	89%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L18e	IPR000039	-	-
Sma3	Glycosyl transferase, family 20	IPR001830	-	-
Sma3	Pseudouridine synthase/archaeosine transglycosylase	IPR002478	-	-
Sma3	Uncharacterised domain CHP00451	IPR004521	-	-
Sma3	Peptidase S26A, signal peptidase I, lysine active site	IPR019757	-	-

Full-Lengther Next Prediction

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
859	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain