SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene60773

Length: 1134 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene60773 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ribosomal protein n=8 Tax=Spermatophyta RepID=B7F9R7_ORYSJ	-	-	86%
FL-Next	sp=Ribosomal protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	60s ribosomal protein l10a-1	-	-	95%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L1	IPR002143	-	0.0	-
Sma3	Ribosomal protein L1, 2-layer alpha/beta-sandwich	IPR016094	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNS9

Fln msg:

Fln protein: MSKLQSDALREAISQIMGDTKEKQRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKLGLDYMDVEGLKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPRLLGPGLNKAGKFPTLVSHQESLEGKVNETKATVKFQLKKVLCMGVAVGNCGMEEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKPNRVF*

Protein Length: 218

Fln nts: TCTCTGTGGTCACATTAGCCCTATATAATGTCAGTATATTAGGGTATGATGGGGCAGTTCGATCCTAAACCCTAATTGAGGGCCGGTCGTGTCTAGGAGAGCGCGTGCAGAGGAAGGCGCCAGGCCAGGGCAAAA_-_ATGAGTAAGCTTCAGAGTGATGCGTTGAGGGAGGCCATCTCCCAGATCATGGGAGATACTAAGGAGAAACAACGTAAATTCACAGAGACAATCGAGTTACAGATTGGCCTAAAAAATTATGATCCTCAAAAGGACAAGCGGTTCAGTGGTTCTGTTAAGTTACCTCACATTCCTCGCCCTAAGATGAAGGTTTGCATGCTTGGAGATGCTCAGCATGTGGAAGAGGCTGAAAAATTAGGCTTGGATTATATGGATGTTGAAGGACTAAAGAAAATGAACAAGAACAAGAAATTGGTTAAGAAACTTGCAAAGAAATATCATGCCTTTCTTGCTTCAGAAGCAATCATTAAACAGATACCTCGGCTTCTTGGGCCTGGTCTCAACAAGGCTGGCAAATTTCCTACCCTTGTATCTCACCAAGAGTCCCTGGAGGGAAAAGTGAATGAAACCAAAGCTACTGTCAAATTTCAATTAAAAAAGGTTCTATGCATGGGGGTTGCTGTGGGGAACTGTGGAATGGAAGAAAAACAGATTTTTCAGAATGTGCAATTGAGTGTTAACTTCCTTGTATCACTACTGAAGAAGAACTGGCAGAATGTTAGGTGCCTATATTTGAAGAGTACCATGGGAAAGCCTAACCGTGTTTTCTGA___GTGGAGCAGAGTGGAGATATTATAATGACACTTTATTTTTGTGTAACTATTAAACATAGGTTATTTTTACTTAATTTCTACCAAACTAATTGATTTTGATGCAAATATTGAGGAATTGAGAAATGTAAGTGCTGGTAAATTGCTGTTTTGAACAATAGAATTTGTTTTTCTATTGGAATAGCTCGGGTCATGGTTTTAGACTTTAACCTTGACATTCAATGTTCTAAAATCATGTTGTGGTATTGAAGTCTATCTAGATTTTTTAATAGTGACATTATTGTTAGAGAGCCTTTTGTTCAATTGGAAATTATCTCATGCAAGGGGATTGTTTCTTGTGTTGAATTAAAA

Fln Alignment:

AllPineV4_rep_c65480___MSKLQSDALREAISQIMGDTKEKQRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKLGLDYMDVEGXXXXXXXXXXXXXXXXKYHAFLASEAIIKQIPRLLGPGLNKAGKFPTLVSHQESLEGKVNETKATVKFQLKKVLCMGVAVGNCGMEEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKPNRVF
A9NNS9_______________MSKLQSDVLREAISQVMADSKEKQRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKLGLDYMDVEGLKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPRLLGPGLNKAGKFPTLVSHQESLEGKVNETKATVKFQLKKVLCMGVAVGNCGMEEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKTTMGKPNRIF

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
469	75		25		0.996473
1018			75	25	0.996473
1085	40	60			1.0
1086		60	40		1.0
1087	40	60			1.0
1088		80	20		0.995505
1089	80	20			0.995499
1090		20		80	0.995499

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain