SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene60755

Length: 1230 nt

Origin of reads: Inia v1 Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene60755

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cathepsin b-like cysteine proteinase 3 [Oryza sativa Indica Group]	-	-	6.0e-33	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Blast2go	cathepsin b	-	-	0.0	80%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase C1A, papain C-terminal	IPR000668	-	-
Sma3	Peptidase C1A, propeptide	IPR012599	-	-
Sma3	Peptidase C1A, papain	IPR013128	-	-
Sma3	Peptidase C1A, cathepsin B	IPR015643	-	-
Sma3	Somatotropin hormone, conserved site	IPR018116	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PRJ6

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 296 - 350

Fln protein: GEVSFSVYEVRN*LLISHLLMCVCCIYIRRT*SSDCQCNKDGIISR*IRIDQDLGSPVYSEKQIVNQTFESTFQTQ*FRWIRESRKQKI*IYN*VTKFYLSGLPIHLMNSTRMHRLSELNAIHMVIVSKV*NMI*S*H*LVILPESLTRIRGIRVSLLIFVV*PA*SRDIILIHRKQQPIELSFSDFLEIQLLKYRVLDDGIYIQDFAHYKSGVYKYIKGDLMGGHAVKLVGWGTEGGTDYWLVANSWNTAWGEDGYFKIARGSNECGIEEDVVAGMPSTKNLVMDPAAEGHASS*

Protein Length: 297

Fln nts: GGGGGAGGTTTCCTTCTCTGTTTACGAGGTAAGAAATTAGCTTCTCATAAGTCATTTACTGATGTGTGTGTGTTGTATATACATAAGAAGAACTTAAAGCTCTGATTGCCAATGTAATAAAGATGGCATCATATCCCGTTAGATAAGGATTGACCAGGATCTAGGTTCACCTGTGTACAGTGAAAAGCAAATTGTCAACCAGACCTTCGAAAGCACGTTTCAAACCCAATGATTTAGGTGGATTAGAGAAAGTAGAAAGCAGAAAATATGAATTTATAATTAAGTGACCAAATTTTATTTAAGTGGGCTTCCAATTCATTTGATGAATTCAACCAGAATGCATCGATTGTCAGAACTGAATGCTATTCACATGGTCATAGTCAGCAAGGTGTAGAACATGATATAATCCTGACATTGATTAGTTATTTTACCGGAATCTTTAACACGAATCAGAGGAATTCGTGTATCTCTCTTAATATTTGTAGTGTAACCCGCATAGTCGAGGGATATTATTCTAATCCATAGAAAACAGCAGCCCATTGAACTCAGTTTCAGTGATTTTTTAGAGATACAGTTACTGAAATATAGGGTGCTTGATGATGGCATCTATATCCAGGACTTTGCTCATTACAAGTCCGGTGTTTACAAGTACATCAAGGGTGACTTAATGGGAGGGCATGCTGTGAAGCTGGTTGGTTGGGGAACTGAGGGTGGAACTGATTATTGGCTGGTGGCAAATTCATGGAATACAGCCTGGGGTGAGGATGGTTATTTTAAAATTGCGAGAGGTTCCAATGAATGTGGCATAGAAGAAGATGTGGTGGCAGGAATGCCTTCAACGAAGAATTTAGTAATGGATCCTGCGGCTGAAGGTCATGCATCTTCGTAA___TCTTCCACATAATAGATATCCAAATGCAATTAGTAATTTTCTTGGTGCCTAAGGTATTGTGAATAGTTTCTAGTACCGATATTATGGTACCTGTTGTCTAAATGCAATTAGTAATTTTCTTGGTGCCTAAGATATTGTAAATATTTGCTAGTACTGATACCAAGGTACCTGTTGTCTTTTCCTCACAGAAGGAATCTGTTGAGCTACGATAGAAGTAAAGCACCTAATTTATTTGTAACATTTATATTGTTTCACATCTGTAAATCATCTGTTTCATTGGAAAAGCTCAACAATATCGGATCTTGTAAATTACATATATAAAATAGGTGAAGTTTTCTCAT

Fln Alignment:

AllPineV4_rep_c65399___PIELSFSDFLEIQLLKYRVLDDGIYIQDFAHYKSGVYKYIKGDLMGGHAVKLVGWGTEGGTDYWLVANSWNTAWGEDGYFKIARGSNECGIEEDVVAGMPSTKNLVMDPAA--EGHASS
C0PRJ6_______________PVEVSFSVY-----------------EDFAHYKSGVYKYTKGDYMGGHAVKLVGWGTEDGTDYWLVANSWNTAWGEDGYFKIARGSNECGIEGDVVAGMPSTKNLVMDPAAGTEGHASS

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
804	90		10		0.90298
1164		14		85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain