SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene60711

Length: 1179 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene60711 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] gb\|AAK93650.1\| unknown protein [Arabidopsis thaliana] gb\|AAM67530.1\| unknown protein [Arabidopsis thaliana] gb\|AEE75944.1\| S-adenosyl-L-methionine-dependent methyltran	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	s-adenosyl-l-methionine-dependent methyltransferase-like protein	-	-	74%

Source	InterPros	Term	Type	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADX5

Fln msg:

Fln protein: MTLGTPQAYGDASYWDNRYRQDNGPFDWYQQYSGLAPLFHLYIPKRHRILMVGCGNAVLSEDMVNDGYQEIVNVDISSVVIEAMQKKYQDYPQLRYEKMDVRDMSAFENSSFDSVVDKGMLDSLMCGPNAQQNVGKMLEEVRRVLKPRGVYILITYGGPHVRMPHLKTAESWTITLHVVAKPGSRRALETPSWAVTDPIPMNDDGSLGPGFHSEDPDLHYIYVCIMDPSQHTTKVY*

Protein Length: 238

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTGGTGAGGGCCAGGGGCTGGGCAGGTGTGTTCTGAAGAAGAAATTGGTCAAGAACGTCGTGACCTTGGCAGTCACGCAGTAGCGGTGAAAGAAAAAGAAGG_-_ATGACATTAGGGACTCCACAGGCATACGGAGATGCTTCTTACTGGGACAACAGATACAGGCAGGACAATGGACCTTTCGACTGGTACCAACAATACTCAGGCCTTGCCCCACTCTTCCATCTCTACATCCCCAAACGCCATCGCATTCTCATGGTCGGTTGCGGCAATGCAGTGCTTTCAGAAGATATGGTTAATGATGGTTACCAAGAAATTGTCAACGTTGATATATCGTCTGTGGTTATTGAAGCTATGCAGAAAAAGTATCAGGATTATCCCCAGTTAAGATATGAGAAAATGGACGTTCGAGATATGTCGGCCTTTGAAAATAGTTCCTTTGACAGTGTGGTTGACAAAGGAATGTTGGATTCTCTTATGTGTGGACCTAATGCACAGCAAAATGTTGGTAAAATGCTCGAGGAGGTTCGCAGGGTCTTGAAGCCAAGAGGTGTATATATTCTGATTACTTATGGCGGCCCTCATGTCCGAATGCCTCATTTGAAAACTGCAGAATCTTGGACAATAACTCTTCATGTTGTAGCTAAACCAGGGTCTAGAAGAGCTTTGGAAACTCCATCTTGGGCAGTGACTGATCCCATCCCAATGAATGATGATGGAAGCCTTGGTCCAGGTTTTCATTCTGAGGATCCTGACTTACATTATATTTATGTTTGTATTATGGATCCATCTCAGCATACAACAAAAGTATATTAA___CGAGAAGCTTCGAAGGGAAAATGTCATTCAAAACCTTAAGCAGGGGTTGTATATAATGCAGAATAGGAAAGAGCTTGATGCAGTCAATTCATTTTACATGTCATGATAAATCATTCTGAATGGGCTATGTTGCTCACATAAATGGATTCCTATGATGATAAAGTATCTTGGAGGCTGGGATAAAAGTTCTCTAGGCACAAGGATGAATTGCCATAATATGTATAGAGTAGTTAGTCTGTCAGCAACAAATTTAGCGGACCATATTAAACTCCATCATATGGGTGATGCCATTGCCTGGCATGTATAAATTTATCAATTGTTGGGATTGTTTGTATTTTTC

Fln Alignment:

AllPineV4_rep_c65219___MTLGTPQAYGDASYWDNRYRQDNGPFDWYQQYSGLAPLFHLYIPKRHRILMVGCGNAVLSEDMVNDGYQEIVNVDISSVVIEAMQKKYQDYPQLRYEKMDVRDMSAFENSSFDSVVDKGMLDSLMCGPNAQQNVGKMLEEVRRVLKPRGVYILITYGGPHVRMPHLKTAESWTITLHVVAKPGSRRALETPSWAVTDPIPMNDDGSLGPGFHSEDPDLHYIYVCIMDPSQHTTKVY
D5ADX5_______________MTLGTPQAYGDASYWDNRYRQDNGPFDWYQQYSGLAPLFHLYIPKRHRILMVGCGNAVLSEDMVNDGYQEIVNVDISSVVIEAMQRKYQDYPQLKYEKMDVRDMSAFENNSFDSVVDKGMLDSLMCGSNAQQNVGKMLEEVRRVLKPRGVYILITYGGPHVRMPHLKAPESWTTTLHVVAKPGSRRALETPSWVVTDPIPMNDDGSLGPDFHCEDPDLHYVYVCIMDPSQHTTKTY

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
752		66		33	0.997452
1038		90	10		0.90298
1039	10			90	0.902981
1040		90	10		0.902982
1041		90		10	0.90298
1043	10			90	0.90298
1044	90	10			0.90298
1045	10			90	0.90298
1050	10		90		0.90298
1051	10			90	0.90298
1058	11	88			0.923564
1061	88		11		0.923564
1063		11		88	0.923564
1078	25			75	0.996473
1080	20			80	0.995496
1093		50		50	1.0
1095	50	50			1.0
1096	50		50		1.0
1097	50			50	1.0
1098		50	50		1.0
1101	50			50	1.0
1106		75		25	0.996479
1107	50	25		25	0.995556
1108	75	25			0.996474
1109		50	50		1.0
1110		25	50	25	0.995595
1111		25		75	0.996475
1114		66		33	0.997452
1115		33	66		0.997476
1118			66	33	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain